RNA id: XM_026937344.2


Basic Information

Item Value
RNA id XM_026937344.2
length 2531
RNA type mRNA
GC content 0.47
exon number 16
gene id pls1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29339123 ~ 29356789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGCTATTGTTCCCTGCACTGTAGGGTAGGAGCTCATCTATTTTGTCACAGTAGCCTGGATCTAAAGCAGGAGTCAAACCTAAGACAGGCCACTTTTATGCTGAGAGAGGCTGTGGAGCACGCAGCATGGAGAACAACGTGACACAGATCTCCCGAGAGGACCTGGAGGACCTCAGGCAAGCCTTCAAAAAAATCGACATTGACAACAGTGGTTATGTCAGCGATTTCGAGCTGCAGGAGCTTTTTCGGGAAGCCAGCCTCTCTTTGCCAGGGTACAAGGTGCGAGAGATTGCAGAGAGGTTCATCGCTGGTGACACCAACAAAGATGAGAAGATAAGCTTTGAAGAGTTTGTCGCGATATACCAAGATATAAGAAGTAAGGAGGTTAGAGAAACCTTTCGCAAGACCATCTCCAGGAAGGATGGGATCTGCTCGTTTGGAGGAACATCTGGAATCTCTAGTGAAGGAACTCAGCACTCATATTCTGATGAAGAGAAAGTGGCTTTTGTCAACTGGATCAATAAGGCCTTGGCAAACGACCCCGACTGCCAACATATCATCCCCATGGACCCGAAAACCGACAGTCTGTTCAAATCAGTGAAGGATGGAATACTCCTCTGCAAAATGGTCAACCACTCCCAGCCAGACACGATTGATGAAAGGGTCATCAACACAAAAAAACGCACAATGTTCAACATGACTGAGAATTTGATACTGGCTCTTAACTCCGCCTCAGCCATCGGTTGCATGGTGGTCAACATTGATGCTCAGGACATGATTGCTGGAACTCCTCACCTGGTGCTCGGACTCCTCTGGCAGATCATCAAGATTGGCCTGTTCGCTAACATCGAGATCTCAAGCAATGAAGCTCTGATCGCACTGCTGGGCGAGGGTGAGGACTTGGACCAGCTGTTGTCCATGTCCCCTGAGGAGCTGCTGCTGCGCTGGGTGAACTATCACCTCAAAGCTGCTGGATGGAAGCCAATCAAAAACTTCACCGAGGACATCAAGGACTCCAAGGCCTACTTCCACCTGCTGAACCAGATCGCTCCTAGAGGAGATGAAGACGACGAGATACGGATCACCATCGACATGTCTGGCATACACGAGGATGACGACCTGAAGAGGGCGGAGCTTATGCTGAAACAGGCGGCTCGACTCGACTGCCGGCAGTTTGTCTCGCCTCAGGACGTGGTGGCGGGGAATCAGAAGCTCAACATTGCCTACGTCGCCAACCTGTTCAACATGTACCCTGCCCTGAAAAAACCCACCGACAACAGCTTCGACCTCACCATGATCGAGGGAGAATCCAGAGAGGACAGAACCTTCAGAAATTGGATGAACTCACTGGGGATAAGTCCGAGAGTCAATCACTTATACAGCGACCTGATGGATGGCCTGGTTATTCTCCAGCTGTATGAGAAAATCCAGGTCCCCGTGGACTGGAAGAAAGTGAACCGTCCTCCGTATCCTGTCCTTGGcgccaaaatgaaaaaaCTGGAGAACTGTAACTACGCCGTTGAGTTGGGTAAAAGGGAGGCAAAGTTCTCTCTGGTGGGCATCGGAGGTGACAATATCAACGAGGGCAATCCCAAGCACACGCTGGCGCTGGTGTGGCAGCTAATGAGAAGGTACACCCTCAACGTGCTATCTGACATTGGTGATGGAGAAAAAATCAGTGACCAGATCATAGTTTACTGGGTGAACAGCACGCTGCAAAATGGAGAAAAGCAATCTACTATCAGCAACTTTAAGGACAAATCAATCAGCACCAGCCTCCCAGTCATCGATCTGATTGATACGATCGCACCTGGAGCCATCAAAGATGAGATGGTCAAGAGGGAAGATCTGAGTCCTGAGGACTTGGTCAACAATGCAAAGTACGCCATCTCAATGGCGCGGAAGATCGGCGCCAAGGTGTACGCGCTGCCCGATGACCTGGTGGAGGTCAACCCCAAGATGGTGATGACTGTGTTCGCCTGTTTGATGGGGAGAAGTCTGAACAAAGtgaagtgaaagtgaagtgaaggcCTGATTGGTTCTGATTCTAATTTATTATCCTGGGGATGGGATGGTGTATCTGTTTGACTGTATTCctgtgttaataataatgttgtcaCATATAAAGTGAAGAGCATACCCTgaaatataagatttttttttttaaacaggtggAGTTGTGAGCTTTGCATCTATGAATTTTTCATACCTTTCGTCACTTGTTGTCTTTCGGTTCCTGCACATTCCGAGCCTCATcagcaaaacagaaaatgatCATTGATCATGACTACATTTAAATTATGCTAACTCGCCTTTTCGCTTAATATGATCTCcattttctattcatttgtCTCATTTGTAGTTGACAAGTTGATTTCTAGAACAAGGAGATGTTGAATAATCAGTTTATTTTGCTAGCAATGTATTATGCTTTATTGTCTCAAACTGTTGTCTTGATATTTTCataatgttcataaatgttGTTTGCTTCCAACGActcattaaataagaaaaataaaaataaaaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86551 lncRNA upstream 42167 29299135 ~ 29301133 (+) True G73000
TU86528 lncRNA upstream 147182 29181767 ~ 29196118 (+) False fubp1
TU86462 lncRNA upstream 289082 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 408991 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 411902 28931076 ~ 28931398 (+) True G72910
TU86633 lncRNA downstream 126473 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA downstream 162319 29519108 ~ 29521022 (+) True G73069
TU86649 lncRNA downstream 167509 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 169413 29526202 ~ 29526918 (+) True G73089
TU86653 lncRNA downstream 184306 29541095 ~ 29541435 (+) True G73092
XM_026935926.2 mRNA upstream 117389 29219526 ~ 29225911 (+) True LOC113539851
XM_034303400.1 mRNA upstream 117389 29220814 ~ 29225911 (+) False LOC113539851
XM_026936710.2 mRNA upstream 125280 29208334 ~ 29218020 (+) False LOC113540294
XM_026936711.2 mRNA upstream 125280 29211965 ~ 29218020 (+) True LOC113540294
XM_026936514.2 mRNA upstream 137557 29196589 ~ 29205743 (+) True LOC113540202
XM_026937018.2 mRNA downstream 33244 29390033 ~ 29423768 (+) True ephb3a
XM_034303854.1 mRNA downstream 98762 29455551 ~ 29459295 (+) True LOC113540045
XM_026937112.2 mRNA downstream 124453 29481242 ~ 29496585 (+) True tbl1xr1b
XM_034303405.1 mRNA downstream 143686 29500475 ~ 29513779 (+) True b3gnt5b
XM_026936995.2 mRNA downstream 143686 29500475 ~ 29513779 (+) False b3gnt5b
TU86406 other upstream 431196 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1721917 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1722623 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1785398 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1786652 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 263204 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1389342 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1389342 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1704941 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1994472 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile