RNA id: XM_026944648.2


Basic Information

Item Value
RNA id XM_026944648.2
length 2064
RNA type mRNA
GC content 0.38
exon number 1
gene id gpr25
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33257229 ~ 33259292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTGCTTTGCCAGTCAGATGAGCACAGATGGCAAGCAGCACTGAGGTGGCATTCTTTCATACCACGATGGAAAATTTTATAGATGATCTCAACTTTTCTGACTATTACGAATTAAATGATACAGTGACTCCAACATCAGTCACTGCAGTGAAGGAGCAACTTCTCTCCATGTCTCACATCTATCTTCCCATTTTgtatttcatcattttctttGCTGGATTCACTGGAAACCTGTTTGTCATCATAGTTATTGGTAACAGGCACAAGAAGAATGCACGTCTGGTAGACACATTTGTGCTGAACCTTGCTCTAGCAGACCTGGTGTTTGTCTTCACTTTGCCCCTATGGGCCGTCTCAGCTGGACAACATGACCAGTGGCCCTTTGGGGAGCTGCTGTGCAAGATCAGCAGCTATATCATCGCAGTCAACCGCTTTTCCAACATTTTCTTTCTCACGTGCATGAGTGTGGATCGCTACCTTGCCATAGTGCGCCTCATGGACTCCCACTTTCTCCGGAGCAGTAAATGTATACATCTCACCTGTGGAGTGGTATGGGGATCGTCTCTAATCCTGGGTACACCGTCACTGGTTTATCGCAAGTTGACTGTTGAAAATAGTTCTTGTATAGATGACCTGGAGTCCTCCTTCTTCCAAAGTATGATTCTGCTGACAGGCTTTCTGACCTTTGTGCTGCCTGTGTTGGTTATCCTCCTGTGTTATGGCTCGATCATGGTCAAACTGCGGCACCACTGTGTCACTGCCGGAAATTCACGTGCTGAAGCCCGATGTCGCCACTCTTTCAAAATTGTTTTCACTATCATTATAGTCTTTCTGGTATCTTGGCTGCCCTACAATGTGTTAAGAACAATTCAAGTCATCTGCAAGATCAGTAATAACAAGCTGGATTATGACACCTACATATATTTGGCTAGAGGGCTCATCATCTCCTCCTGCCTGGCCTTCCTCAACAGTTGCCTGAATCCAGTCATTTACTTGTTCCTGGATAAGCATTTCAGACGCAGCGCAGCCGCACAGTGCAAGTTCTGCATGGGCAAGGGGGATATACAGCAGAGTTACGTATCCTCTAACTCAACTGCCTCAAATGGTATCTCAGAGAGCCTGGGAAGCACTGCAACCCGTGGCCGCGTCTTCTCCCTCACTCAGAAGAAATGAACTCACTCAGCCACATCTGTCCACAGGTTATAGCTTTACATGATTTtagctttattattaaatacagaaatatactcAAATGAattcttattatattattttatgaatgcattaatgGATTACATTTGCAGCAGGATGTGTTAATGCCATTGTGTTTGTGGGGTATtctaattaatttttaacaaCACTTTCttgacttttgtttttaaacagaaaGGTACTCCTCAAATATGtgccataaaatatttttcagtattttactCCTGCTTTTCTAAAATGGTATAGATTCAAAGAAgccaattatatattttatgaagtTGTCTACAGTGTCTTTATTTGTGCTCTGGCTGTCTGTTTTGCTCAACAGCTTATATTCCAATTGTTAGGAATGAAAATGCCCCCAACCATTTCCTTTAGATAAATCATTGCTCGAACTGTTTATCAGTAATTTCAACATGCCAGAGATCGAttttaataaatgcagaaatgaaTGCAATTGTACTACTTTCTATGTTGTTCCCTTTTATTAACATAgtcatatacatttttaaaaactaagattttttaaactattagatttaaaaataaacattactctttttttattactcttataactattttaaaatagtaaaCATTACTCTTTAATGCTTAATGTGCACATACTTCACaattaacaaaacatataaactaCAGTaatttaaatccattattattattatttttccatgcTCACTGATGCATTTTATCCATGTAAAATGTAGAatgtttttatgtgtattttttgtgtatttcctCTTTAAGTTCAACAATTTCAgtgatgtgtttatttgtgctcTGGAACCATTATGTATTCTGGCAATCTTGAGAAATAAAGtctaaaactgtt

Function

GO: NA

KEGG:

id description
K08405 GPR25; G protein-coupled receptor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88580 lncRNA upstream 108176 33148537 ~ 33149053 (+) True G74750
TU88585 lncRNA upstream 121470 33130043 ~ 33135759 (+) True mmp14b
TU88574 lncRNA upstream 131345 33125668 ~ 33125884 (+) True G74747
TU88509 lncRNA upstream 232898 33023976 ~ 33024331 (+) True G74686
TU88499 lncRNA upstream 341256 32915540 ~ 32915973 (+) True G74676
XM_034304145.1 mRNA upstream 7570 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA upstream 7570 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA upstream 7570 33174474 ~ 33249659 (+) False chd8
XM_034303675.1 mRNA upstream 108798 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA upstream 108798 33137051 ~ 33148431 (+) False mmp14b
XR_004577922.1 other upstream 330215 32926616 ~ 32927014 (+) True LOC117596970
LOC117596944 other upstream 375864 32880711 ~ 32881365 (+) True LOC117596944
LOC117597138 other upstream 509436 32745500 ~ 32747793 (+) True LOC117597138
LOC117596925 other upstream 514092 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 514259 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile