RNA id: XR_003404798.2


Basic Information

Item Value
RNA id XR_003404798.2
length 3071
RNA type misc_RNA
GC content 0.51
exon number 14
gene id shrprbck1r
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4532921 ~ 4553038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgcggGCGGATCAGCCAGTGACGGGGTGGTTGGTGTATTTGTAATGACACATTTTGAAAGCACATGAACATAGTAACCAAGTTCGAGCTGGAGCTGAAGTGAAACTGGATACTTTGTTGCCTGCctgccttccttcctttctttctttctttctgctctgTAGGAAAGTAGTTAGGATAATGAGAGAGAAGTTTTTTGTTACGCAAGTGTGGTTatgtaacaacaacaaaataacagtGGTTGAAAGAGAAACGGCGGTGGAATGAGAAGTTATCGACGGTGAAGGTGGAATGTCGCAGAGCTCCGGAGCTCCGCAGCCGCCCCCGGGTCCTCCGCCCTCCTCCttcttcacctcctcctcctcctccacctcctcctacACCTTCTGCTCCTCTCAGCCCGGGCTGGAGGCCTCGGCGGCGGCGGGGGCGGGATGCAGCACCGTGCTGATGTCAGTCAAAGTGGCAGCGAGTCACTCCGGGATCCGGCCGCTGTGTCTCCCCGGCTGCGGGGATGAAACTCTGCGGCTTCAGCTCAGCATGGACCCGGGGAAGGCGGGGGAATTCCGGCTGGCCCTGAGACACAGCAGCGGAACTAACGCgtCCATTGCTGAGTTTGATCTCAGGACGGTGCGCTACGAAGTCAAGACACCACGGAGTCACGAGCTGATCTTGGCCACGTCCCCTCATGACCGCATCACCTTTAACTTCCGCAGCGAACAGGAAGCGCAGGCCTGGGCCACTGTGGTGATGTCATCACTCCGCGAGGCTCATCGAGTGGCCATTGGTTGTCCTGCAGATGATGGACAGCTTCTGCCCCAGCCCCTGGTTGTACAAATGCCCGCCTCACTGTCCAGCACGGAGGAGCTGTGTATGGAGCTGGTTCGGTCTATAGAGGCCGGTGATGTTCAGGCTGCGTCTGTGTGTGCGGAGTCTCTGGCTCGTCAGCACACACCGCTGTGCATTCAGCCAAATCACAAACACTACACCAACAAGGAGATCAgTTTGTCAGTGGTGTTGGAGGATGCTTCCTCTTCCTGTTGTGTCACTGTTAAAGTCTTCCCCCACACCACGGTGGCTGCTCTTAAACAGCAGGTGTTTGTGCAATACGGTTTCCATCCACATGTCCAGCGCTGGGTCATCGGTCACTGTCTGTGCGCCGACTCCCGCTCTCTGGCGTCCTATGGCGTGCAGCAGGACGGAGACACCGCCTTCCTGTACCTGGTGTCCCGACAGAGGCGACAGGACCAGGAGAACTTCCTGCTTGCTCCCACTTCCTCCTCTGGGGACACATATTCTATTGGCAATGGGCCGGAGGGAACGTTGAAAGCCTACAGTACGCTGCCCACCAGACTGCACCCGCACCACAACaacagcgGCAGTCGTAGTTTGGCCGGGATAGAGAGGTTGGGCTTGGGTGAAATCCGTGACCTGATTAACCTGGAGATGCCACAGCTGAACGAAGCCCTCTTGCCCGGCAGAACTAACACACAgcTGGGTTGGGCGTGTCCTTCCTGTACGTACATTAACAAGCCGACGCGTCCCGGCTGTGAGATGTGCAGTGCGGACAGACCCGAGAGTTACACAGTGCCTGGAGGCTACAGACCTGACACACTGGAACTGCGACGCATCCAACAGGAGAAAGAAGCCATCAGACAGTACCAGCAGgcACAGGAAGCAGAGCGCAGGGAGAACTATGCTcggctggtggaggtggacgGTCAGGAACTGGTCCCGAACACAGAGAGCATTGAATGCAGGATTTGTTACTTACAGCTTCAGTCAGGAGAGGGAGTCCTGCTGCGTGAATGTCTCCACTGCTTCTGCAGagaatgTTTGCGTTCGGTAATCCTGCTTTCAGAGGATCCTCAGGTGGCGTGTCCCTACAGAGACGAGGCATACGCATGTGACTGCAcactgcaggagagagagatcCGCGCTctggTTTCGGGTGAGGAGTATGAGCGCTGGCTGCAGCGGGGGCTTTCAGTGGCTGAGTCACGCTGTGAGGGCAGTTATCACTGTGCCACCACCGACTGTCCAggctggtgtgtgtatgaggacaCTGTCAACACCTTCCACTGCCCTGTCTGCAGCAAGCACAACTGCCTGCTCtgcaaggcaaTTCATGAAGGGATGAATTGTAAACAGTACCAGGACGATCTTGCTGCTCGTGCCATCAACGACATTGCAGCCCGGAGAACGAGGGACCTCTTGAAGGTCACACACAACTCTGGTGAAGTCTGGCGAGGCGATGCACTGTCCTCAGTGTGGAATCATCGTGCAGAAGAAGGAAGGCTGTGATTGGCTGCGCTGCACTGTGTGTCACACAGAGATCTGCTGGGTCACCAGAGGGCCACGCTGGGGCCCTGGGGGTCCTGGAGACACGAGTGGAGGTTGCCGCTGTAATGTGAATAAACAGAGATGCCACCCAAAATGTCAGAACtgccactgagagagagagagagcgagcgagcaCAAGTGTGAGCGAAACCGTCCCCTGGATGAAAACCAATAACAATGAAAAGCcttaaaaaaagactgaaagcaAAAACCAAAGCTGAATATCATTAACTTTCATGAATCATTATTAAGTTAATAATATTGGacaaaatgcactttttatGTCTTACGCCGAGCATTGATATTACACaggtaaaaatattaatatactgAAGTGCCTTATTTTATAAACCCAACTGTTTTTCAGGGTGCTACATTTTCACATGGATTTTTATAGATCCAGTATAATTCCTGTGTGTTTAACTGTttttcttaacaaaaaaaactttacaattttatttaatattgataaAACACCGTAAACTATTATTCTCAGAGTTTTAATGGTAATGACAAAGCATGAATTTTGGCAAAATTCCAAAATTCCACAGCTACAGTGACAGCTACAGTGACAGTTTTACTCTATTGAGAATAACTGTTCAGTGCCTTATGTTGGAGATTTTGTCTTGAATGAAAACATTCTTGTATGAccttttgtataatttattttacaattcaaGCTATCACTGAtctgaaaacaaacaataaacatttccacatgAAAAAA

Function

GO:

id name namespace
GO:0097039 protein linear polyubiquitination biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69979 lncRNA upstream 146115 4049152 ~ 4386806 (+) False LOC117597054
TU70012 lncRNA upstream 160364 4372121 ~ 4372557 (+) False LOC117597054
TU70002 lncRNA upstream 236456 4293289 ~ 4296465 (+) False LOC113547236
XR_004578031.1 lncRNA upstream 414331 4117786 ~ 4118590 (+) True LOC117597097
TU69985 lncRNA upstream 472080 4058274 ~ 4060841 (+) False LOC113545588
TU70170 lncRNA downstream 2357 4555395 ~ 4555599 (+) True G59304
TU70208 lncRNA downstream 110573 4663611 ~ 4664466 (+) True G59338
TU70213 lncRNA downstream 112974 4666012 ~ 4666455 (+) True G59340
TU70215 lncRNA downstream 116825 4669863 ~ 4670083 (+) True G59342
TU70216 lncRNA downstream 117942 4670980 ~ 4671460 (+) True G59343
XM_034303801.1 mRNA upstream 19458 4463938 ~ 4513463 (+) False LOC117597089
XM_034303802.1 mRNA upstream 19458 4463938 ~ 4513463 (+) False LOC117597089
XM_034303800.1 mRNA upstream 19458 4475196 ~ 4513463 (+) True LOC117597089
XM_034303803.1 mRNA upstream 19458 4503552 ~ 4513463 (+) False LOC117597089
XM_034303811.1 mRNA upstream 45555 4479498 ~ 4487366 (+) True LOC113547238
XM_026947552.2 mRNA downstream 186532 4739570 ~ 4746302 (+) True mnx1
XM_034303594.1 mRNA downstream 221148 4774186 ~ 4789253 (+) True LOC113547242
XM_034303595.1 mRNA downstream 252616 4805654 ~ 4866411 (+) True LOC113547214
XM_026947547.2 mRNA downstream 326762 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_026947564.2 mRNA downstream 343930 4896968 ~ 4913622 (+) True LOC113547295
XR_004578033.1 other upstream 526580 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 680354 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 802573 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1730702 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1733493 2799356 ~ 2799428 (+) True trnav-aac_16
XR_004578071.1 other downstream 97439 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 154404 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 402097 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 421157 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 626524 5179562 ~ 5188046 (+) False LOC113547261

Expression Profile