RNA id: XM_026947466.2


Basic Information

Item Value
RNA id XM_026947466.2
length 1805
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113547217
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4613028 ~ 4633265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacaggatggagttcagtccactccctgtgatgctctTGCTGACTTCACTGATACCACTGACACATGCTCAAGggaGTTCTAAAGCGGTGGTGTCCATAAAGCCTGATACACATGTGTACACTTGTGAGAGAGTTATTCTCAGATGTGACctacagagaggaggaggagactcTGGGTGGATATACAGCTGGTATAAGAATAATGACAGGCTCTATGTGAATAGAGATAGATTCAGTGCAGACAGCACAATGCAGGAGGTCACTATCAGTTGTGTTATAAAATCTGACCGTGGTGACTACACCTGCAGAGGACAGAGACATGactctcagagctcagagatcagtgatgctgttacactgGCTGTATCAGAGACACCACAGCCAGTACTGAAAGTATCTCCACAGACATGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTATACAGACTGGACATTCAGCTGGTACAGAGATGTTCCATACAGTGACAATAATGGCCATTTCATATATAGAGCGGTGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTTAACCACACAGGAGTTTATGtgtgcagaggagagagagaagaacgaGCCTTTCACACATATTACAGCAATCTACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttactaatgactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTgagacaatacacacacaaatggggATTGTCAATTTGTTCACAATCGGGATCAGTTACAGCATCTACATGTAAAATCAGCTCACTCTCCACATCCCACACTGGAGTTTACTGGTGTGAGTCTCAATCTGAAGAAAACAGTAATCCTGTCAACATCACAGTGTATGcgCCAGGCCCATCACGTGTAGAAGCTCCATCCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCGCTCCATATTTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGctcACACTGAAGACAGAATCAAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAAGAGAATGCACTGGTGGATGCTTTGGTGTTTTCTTTAAGGTTATGTtgggattttaaaataatattgacTTGTTCTAATGTAGCACAATATCTTACAGCCAGCCTTTTTGTTTTGACTGGATTCATTTAGCTAAAGCTTGTGAATGTTGCTACTGCAAAGTACTGAGTAATCTGAGCAAGTAAAAtagtcttaaaaaaataaaaataaagaaaaaaagattttgggcAAGCTAATGCTTTTGATTTAGTATGTGAGGATTGAGCTGTGCTTCAGCTGAAAACCTGCAAAAAGCCTAAATGTGTCTGCTGTTGGAATGAATTGAATCCCAATATGGGGACCTGCACATTAAAAACTCAAAACATTTCATGTAACATTTCTGATAAAAAGCTTGGTGTGCACTGTTGAGAGCAGCCTTgagatgtgtttttatatttgtttaacttTAATTGTAGTTATGTGAGATTTGTGGACGTAATGATTCGATAAATTAAATTCATCATTATCAATTCACAGAATTATGTAACCTGGTTGCAATGTTGTATCATATGAAGTACAAGTAATACACTGGGAAAACTCTGAATAACTACTCTTGCacctttttaaatattagcattttcaccattttgtatttttatataaaatatgcatttatattgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70266 lncRNA downstream 16497 4580941 ~ 4596531 (-) False LOC117597175
XR_004578075.1 lncRNA downstream 16499 4593407 ~ 4596529 (-) True LOC117597175
XR_004578076.1 lncRNA downstream 21260 4590344 ~ 4591768 (-) True LOC113547239
TU70264 lncRNA downstream 49533 4562924 ~ 4563495 (-) False LOC117597059
TU70259 lncRNA downstream 52518 4559733 ~ 4560510 (-) True G59385
TU70281 lncRNA upstream 43900 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA upstream 43900 4677165 ~ 4678736 (-) False G59398
TU70282 lncRNA upstream 44294 4677559 ~ 4678736 (-) False G59398
TU70306 lncRNA upstream 124166 4757431 ~ 4757765 (-) True G59416
TU70478 lncRNA upstream 236895 4870160 ~ 4914451 (-) True G59559
XM_034304010.1 mRNA downstream 3466 4605172 ~ 4609562 (-) False LOC113547216
XM_034304009.1 mRNA downstream 3466 4605172 ~ 4609562 (-) True LOC113547216
XM_034303593.1 mRNA downstream 41201 4560788 ~ 4571827 (-) True LOC117597059
XM_026947467.2 mRNA downstream 85921 4514603 ~ 4527107 (-) True maf1b
XM_034303587.1 mRNA downstream 328636 4269168 ~ 4284392 (-) True LOC117597053
XM_026947531.2 mRNA upstream 1060 4634325 ~ 4640284 (-) True LOC113547273
XM_026947529.2 mRNA upstream 8755 4642020 ~ 4647759 (-) True LOC113547272
XM_026947528.2 mRNA upstream 17429 4650694 ~ 4660380 (-) False LOC113547271
XM_026947527.2 mRNA upstream 21280 4654545 ~ 4660380 (-) True LOC113547271
XM_026947532.2 mRNA upstream 29875 4663140 ~ 4672185 (-) True LOC113547274
TU70115 other downstream 356744 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 377789 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 692897 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 888463 3710571 ~ 3724565 (-) True LOC117597100
TU69907 other downstream 979795 3630059 ~ 3633233 (-) False si:ch73-174h16.4
TU70276 other upstream 13191 4646456 ~ 4647880 (-) False LOC113547272
trnar-ucg_1 other upstream 176527 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 845277 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1266984 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1266984 5900249 ~ 5959545 (-) False G60166

Expression Profile