RNA id: XM_026947470.2


Basic Information

Item Value
RNA id XM_026947470.2
length 2238
RNA type mRNA
GC content 0.50
exon number 11
gene id ripk1l
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5972624 ~ 5986215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatgtttctacaatCCGGAAACAAACTCTACAGGAACTTAAAGTAGGATACAATGCTCGTCGTGCACCTATAGACCACAGGGAGCAGGGAGCCTTTTGGGATTTGGCCCATGTCGCATTAAGCAGTGAAACCATGGCATTGAACTTGGACATCATGAAGTCCTCAGACCTCATCAAGAAGGAGCGTCTGGATTACGGCGGGTTCGGGGAGGTGTTTCTGTGCTACCACAAAACGCTGGGACATGTGGTGCAGAAGACGGTCTACACAGGACCACCACGTAATGAGCAGAAGTCGTCTCTGCTGGAGGAAGGCCGTCTGATGAGCAAGTTGAAACACGAGCGCGTGGTTAAGCTGCTGGGGGTCATTCTGGAGGACAGAGACTACTCGCTGGTCATGGAGCTCATTCCTAAAGGCAACCTGCTGGCCATGCTGCAGAAAGTGAGTGTTCCCATATCCATTAAAGGAAGGATAATTCTGGAGATCCTAGAGGGAATGATTTATCTAACAGACAACCAAGTGATTCACAAGGATCTGAAACCGGAAAACATCCTGGTTGATGAACATTTCCATATAAAGATCGCAGACCTTGGACTGGCCACATGTCAGACGTGGAGTCGGCTGACGAGGGAGGAGTCGCGCAGACAGAGTCGGGGAGGCAGGAGGTCGTGTGTGGTGGCGGCTGGGACGTTGTGCTACATGGCTCCTGAGCACCTGGAAAGCATCAACACTCGCTCCACTGAAAAATCGGATGTTTACAGCTTCGCCATTGTGGTGTGGGTCGTTCTGGCCAGCCAGGAGCCTTATGAGAATGCTATTAGTCAAGACCAGATCTGCCAGTGTGTGCGTAAAGGAGACCGTCCAGATGAGAGCCTTATTCCATGTGATTCACCAAAAGAGATCATCACGCTTATGAAAAAATGCTGGGAACATGACCCTCAGAAACGACCCCGGTTTAAAGAGAGCTATGACTCATTTTTGCCTTTCTATAAGAACAACCTGGAAAAATATGTTGAGAAGGACTTGCAGAGTCTTAAGGATTTATATGAAGGTCCATTGGAGCTGctggaaaaattaaaaacactgacaacAGAGCCGGGAGGTATTGCTGCAGGACTGGAGGCTCCGTCCTTTCTGCAGCGCTCCGGTGACTCACCCACCCCTCTGAGGAGTTCAGAACTGGGGCCGGTGGAAGTGAGCTTGGAAGACCTCAGTTTAATGACCTCGGGCGCCTTTCAAGTGGACGCCGTCCCTGACCATCCTTCCGCGCCTCCTAACCTGGAGCAGAAACTGGACCAAGAGTTAAACTACCACAAACATGGCAGCTACTTCCCTGAGCAGCAGCCCAACCTCCCCTCGTACCTTAACTCTAATCCTCCCTTGCAGACTGCATCTAGTTCCAACTGGGGTGGAGATCTTCCTCAGCAGGTGTCCTCAGTGCAGTCTTGGTCCAAACCTAACCCTTATCAGAGTCCTTTTGAGGCTTCAGTCAGGCCGGATTACGACAGTCAGATGTCAGTGCCGCTTTCGCAGTGTGGACCGTACCAACAGTCCAAACCGCTCGAACGCTTGCAGTCATGGCCTTCTGACATCTCTGCAGTGGGGATCTCGCCGCAGACAGAAACagGTGGATCACTGTACATCAGTCAAGCCAGTGGGATTCAGATCGGGAACAACAACACCATGCACTTCCGCAGTATGGACAGCTCCTCTCTCAGCTCTCAGTCCAGCACGTCGTCCTCCAACACAAAGTATAAAGAGCTACTAATGAACTATGAGTTCCACAGCGTAAGTGATGAACATCTGGAGCTGGTCCGAAAGAACGTAGGCGGGAAATGGAAAGCCTGCGCCAGAAAGCTGGGCCTCACCGAGGTGGAGATTGACGCCATCGAACATGACTATGCACGTGATGGCCTGGCTGAGAAGGTCCACCAGATGCTGGAGCGCTGGAAGATGAAGGAAGGTCTTCAAGGCTGTACGGTGGGAAAACTGTGTCGAGCCCTGGAGCACTCCGTTAAAGCAGATGTGCTTATCGAACTACTGCACAAGTCTCAAGACTACACTGTTCTTCTGAATGCCAGTGCTCTGAGCCTGATTTAACAACGAGTTGTAGTCCAGGTGAAGGTTTTATACACACAAGTGATAATAgcagtggaggttattattatttttctatgtcttgtttttctatttctgttttaattttcatacttttgaatgtatttgaatctttttttttt

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K02861 RIPK1, RIP1; receptor-interacting serine/threonine-protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71204 lncRNA downstream 11 5969895 ~ 5972613 (-) True G60181
TU71206 lncRNA downstream 11 5969895 ~ 5972613 (-) False G60181
TU71195 lncRNA downstream 34492 5914343 ~ 5938132 (-) True G60173
TU71164 lncRNA downstream 73609 5897379 ~ 5899015 (-) True G60151
TU71166 lncRNA downstream 73609 5898093 ~ 5899015 (-) False G60151
TU71348 lncRNA upstream 393483 6379698 ~ 6379897 (-) True G60311
TU71365 lncRNA upstream 403488 6389703 ~ 6390077 (-) True G60328
TU71370 lncRNA upstream 408650 6394865 ~ 6395071 (-) True G60333
XR_004578003.1 lncRNA upstream 601328 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA upstream 601796 6588011 ~ 6602226 (-) True LOC113547257
XM_026947543.2 mRNA downstream 5320 5956127 ~ 5967304 (-) True LOC113547282
XM_034303996.1 mRNA downstream 22944 5931330 ~ 5949680 (-) True LOC113547251
XM_034304148.1 mRNA downstream 54664 5904196 ~ 5917960 (-) True LOC113547287
XM_034304149.1 mRNA downstream 54664 5904333 ~ 5917960 (-) False LOC113547287
XM_034304132.1 mRNA downstream 234402 5726590 ~ 5738222 (-) False LOC113547299
XM_034303940.1 mRNA upstream 532248 6518463 ~ 6560326 (-) False mylk4a
XM_034303939.1 mRNA upstream 532248 6518463 ~ 6560326 (-) False mylk4a
XM_034303938.1 mRNA upstream 532248 6518463 ~ 6531220 (-) False mylk4a
XM_026947558.2 mRNA upstream 532248 6518463 ~ 6531220 (-) False mylk4a
XM_026947560.2 mRNA upstream 532248 6518463 ~ 6531220 (-) False mylk4a
TU71184 other downstream 13079 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 42425 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 486827 5478542 ~ 5485797 (-) False cldn1
trnar-ucg_1 other downstream 1162760 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 1324744 4646456 ~ 4647880 (-) False LOC113547272
trnak-cuu_3 other upstream 194672 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 457529 6443744 ~ 6443815 (-) True trnae-cuc_12
TU71817 other upstream 896254 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 2589291 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2997019 8983234 ~ 8984453 (-) True G61478

Expression Profile