RNA id: XM_026947471.2


Basic Information

Item Value
RNA id XM_026947471.2
length 2239
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC113547224
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5100415 ~ 5104126 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatcagaagtccatagtcttaaccactgagctaccacttccctatATGGAGTGTTATGTTGAAGAGTGCAGGGAATTTAAAGTCCTAGGATGAGAGCATCACACATCTTTTCATATGATGTTATGTTTACCTACAGCTCACTCTGTCATTTTCATTGGCTGGATTTTAACCCTCCCTTATGATGCTCAACTAGTGACAAAGAAAACTGTTCCTGTTAATATTGCCATAACACAGTTGTTTCAGtctcacacatttttcttcgTTTGACTGTTTTCTACAACACAGATGAGTCATGTGTCTCACTCAGAGGTCTGGATTGGTCGCTCACAGTTGGCACGCCCAAGCTTGTATTACGTAATGGCACACTGCATTCGAGGTCATTCAGCTGTGCAGGAAACTTCTGAGTCATCTGTGTCATCTACCACTAATTAACCAGGATTATGGCTACAGGATTTCAAGACTCATCACTGATTGTACGTGATTTGATCCAGAAGAGTGTATTAATCAGTAAAGGCTCACCAGCACGATATTGTCTCCTCACAACTAGAAGCAATCTTGAAAAAGACGGCTCAGTGAGAAAATGGACATTTGGACAGCGAGATGTCAATATGCAAAACAAAATCCTACTGATGGTAGGAGAAACCGGAACAGGCAAAACTACTCTGATCAATGCCATGGTAAATTATATACTCGGGGTGAAGTTTACAGATGAAGCGTGGTTTGAGATTACAGAAGAGGGAGGAGATAATCAAACGTCAGATCAGTCAAAAACGCAAACAACTGAAATCACTGTGTATGAGGTCTTTGCTCAAGACAACCCAATCTGCCTTACTATCATCGACACTCCAGGTTATGGAGACACCAGGGGAACAGATATGGATAAACAGATTGCTGAAAATCTGTACAAACTGTTTCAAAATGATACTGGAGTGAAAGAAATCGATGCAGTGTGTCTGGTAGTGAAGGCATCTGACCATCGTCCCTCTGACAGACAGCATTACATCTTTGATGCTATTTTGTCCTTATTTGGTAACGACATAGAGAACAATGTTGTCATTTTTGTAACTCACTCAGATGGAATGCCTCCAGAAGATGTGATTAATGCCATCAAGAAAGCAGGGATTCCCTATAGGAAAGATGGAGAAAATGAACCTGAGCATTTCTTATTCAACAATCGTCAAACTAATAAGAGGAGCCCGGCGTATAAAAGAGCTCTCCAGACAGCTTGGGAACAAACAGAGAacactttaaatgttttttttgcctCAATGAAAGAACAGTACAGAAAAAGCTTAGAGCAGACTGAAAGTGTTCTGACTGAGTCCAAACAGCTTGAAGCCTGTATTAATAATCTACAAAACCGCATTGACTTTGTAGAGTGCAAAGGTAAAGAACTGGCTCAGACTCAGAAAGCCCTTGAGGAAAACCGAGAAAAGattagaagaaataaaaactttacttttacagtcaccaaatattacaaagaaaaagttCTCATTGAAAATGCTTCATTGTGGGACAGAAAGGCCACCACTTGCTCTGTCTGTGAGGAGAACTGTCATGAGTATGGCTGCTGGAGTGCCTGGGATGCTTGGTGGTGTGAAGTCATGAGAAATGaccactgtactgtatgtacaggtAAATGTCACTACACTAAACATGTCAAAGAGTGCAAGAAATATGTTAGAAGCAGCAAAGAAATCATAGTGACAtttgatgatttaaaaaaacagtatgaCAGCAGCAATAATTCAGCATCAGATATCAAGTTTGACTCAAAGTCctttgaaaatgttaaaaaggaGTTTGAAAGCAACaagaaatggaaaaaggaaaagataaGCATAGAGAAGAGACTGAAAGAAGAACTGATCAAGACTGAAAAGGATAAAGCTAAGCTGGTGGAAGAAGCCTACAATGCCATCATGAAACTGTCTGAGATTGCTTTAAAGCGAGATTCTGCTTTTATTGTTCAGTGTCTTGACTTCTTGATCCCTCGAGCTGAGGAAACCGGAAGAGACTTTATTGCTCAGAAACTCAGAAGAGAGCTGAGGAAATTCAACCTGAATCACAGTAAATAGTTAAAATAGGTAATGGAGTATGCAAGAACAGGTttcactaaaataaaatgtgttgttactaGTACAAAATGAATTCAGGAGATTAAACATGGCCATTGTAACATGTAAGAGTGCAGTTTTTGttcaatttaataaaatgcattgtgTTTATTCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70536 lncRNA downstream 14058 5085083 ~ 5086357 (-) False LOC113547297
TU70520 lncRNA downstream 142494 4957717 ~ 4957921 (-) True G59598
TU70512 lncRNA downstream 158298 4940739 ~ 4942117 (-) False LOC117597188
TU70504 lncRNA downstream 159757 4928360 ~ 4940658 (-) False LOC117597188
TU70478 lncRNA downstream 185964 4870160 ~ 4914451 (-) True G59559
XR_004578090.1 lncRNA upstream 18010 5122136 ~ 5129619 (-) False LOC117597191
XR_004578091.1 lncRNA upstream 18010 5122136 ~ 5129619 (-) True LOC117597191
TU70733 lncRNA upstream 75619 5179745 ~ 5196452 (-) False G59777
TU70747 lncRNA upstream 88034 5192160 ~ 5220686 (-) True G59788
TU70725 lncRNA upstream 91480 5195606 ~ 5212658 (-) True G59777
XM_026947566.2 mRNA downstream 15264 5082808 ~ 5085151 (-) True LOC113547297
XM_034304054.1 mRNA downstream 75015 5020107 ~ 5025400 (-) True LOC117597187
XM_026947577.2 mRNA downstream 82566 5013348 ~ 5017849 (-) True LOC113547303
XM_034304065.1 mRNA downstream 82608 4992613 ~ 5017807 (-) False LOC113547304
XM_026947579.2 mRNA downstream 82608 5006568 ~ 5017807 (-) False LOC113547304
XM_026947505.2 mRNA upstream 25571 5129697 ~ 5150222 (-) True LOC113547258
XM_026947506.2 mRNA upstream 25572 5129698 ~ 5150222 (-) False LOC113547258
XM_026947508.2 mRNA upstream 204735 5308861 ~ 5357290 (-) False dnm3b
XM_026947509.2 mRNA upstream 204735 5308861 ~ 5357290 (-) True dnm3b
XM_026947565.2 mRNA upstream 289751 5393877 ~ 5399388 (-) True LOC113547296
trnar-ucg_1 other downstream 290551 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 452535 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 844131 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 865176 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1180284 3895201 ~ 3920131 (-) False LOC117597092
TU70820 other upstream 374416 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 796123 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 796123 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1076761 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 1339618 6443744 ~ 6443815 (-) True trnae-cuc_12

Expression Profile