RNA id: XM_026947508.2


Basic Information

Item Value
RNA id XM_026947508.2
length 6164
RNA type mRNA
GC content 0.46
exon number 21
gene id dnm3b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5308861 ~ 5357290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTGGAGAATTACATAGGCTCAGGTTTGGGACGAGATGTCCCTCTGACGCGCAGATGCGCCCGCGGTTTAACCCGTTCCAAACAAACCCAGGGACAGGCCTTGTGCAAATCACACTGTAGCTGTGCATCTGCATTGTGCCTCAGTCTGGAACCAGGATTAGTCTCTGGGAATTAAAGGTCTGCGGTGTTGTTCTGAAGCTGGAATAACGAGGAATCCACGCTTATTGGCCTCTTGATGCGCAAAGGTCAACATCAGCATCCTCGCTAGCTCATCATCCCTGCATccccacatctctctctctctctctctctctctctctctctctctgtgggtgCCATGGGGAACCGAGGCATGGAGGAGCTGATCCCGCTGGTCAACCGTTTGCAGGACGCCTTCAGCAGCATCGGGCAAAGCTGTAACCTCGACCTGCCGCAGATCGCCGTGGTGGGAGGCCAGAGCGCCGGAAAGAGCTCCGTGCTGGAGAACTTCGTGGGAAAGGATTTTCTTCCCCGAGGCTCTGGCATCGTCACCCGCAGGCCTCTGGTGCTGCAGCTCATCAGCTCTAACACAGAATGGGCCGAGTTTCTTCACTGCAAAGGAAAGAAGTTCACAGATTTTGATGAAGTGCGTCAGGAGATCGAGGCCGAGACGGACCGCGTGACTGGAGCCAATAAGGGCATATCCCCTGTTCCTATCAACCTGAGGGTGTTTTCTCCACATGTGTTGAATCTGACTCTGATCGATCTGCCGGGGATCACCAAGGTGCCCGTGGGAGACCAGCCTCCAGACATCGAGCAACAGATCCGTGACATGATCATGCAGTTCATCAGCCGAGAGAGCTGCCTCATCCTCGCCGTCACACCCGCTAACACCGACCTGGCCAACTCCGACGCCCTCAAACTGGCTAAAGACGTCGATCCTCAGGGTCTGAGGACGATTGGCGTGATCACTAAACTGGACCTGATGGATGAAGGCACTGATGCTCGAGAGGTTTTGGAGAACAAGCTGCTTCCTCTGCGGAGGGGTTATATCGGGGTGGTGAACCGCAGTCAGAAGGACATTGAAGGAAAGAAGGACATTAAAGCAGCTCTGGCTGCAGAGAGGAAGTTCTTCCTGTCTCATCCTGCATACAGACACCTGGCTGACAGCATGGGAACACCTCATCTGCAGAAAACCCTCAACCAGcaactgaccaatcacattcgGGACACGCTGCCTGCTTTTCGGAGTAAACTTCAATCTCAGCTTCTGGCTCTGGACAAGGAGGCTGAGGAATATCGCCACTTCAGACCTGACGATCCGTCGCGCAAGACTAAAGCCCTGCTGCAaATGGTGCAGCAGTTTGCAGTGGACTTTGAGAAGCGGATTGAGGGATCAGGTGATCAGGTGGACACTGTTGAGCTGTCAGGAGGAGCCAAGATCAACCGCATCTTCCACGAACGCTTCCCTTTTGAACTGGTCAAGATGGAGTGTGATGACAAGGAGATGCGCCGGGAGATCAGCTACGCTATCAAAAACATCCATGGCATCAgGACGGGCCTGTTCACTCCAGACATGGCGTTCGAGGCGATAGTAAAGAAACAGATAGTGAAGCTGAAGGAACCCTGCATTAAATGTATTGACCTGGTCATTCAGGAGCTCATCAACACAGTGCGTCAGTGTGCTAATAAGCTCGGTACGTTCCCCATGCTGAGGGAGGAGACGGAGCGAATCGTCACTTCACACATTCGCGAGCGCGAGAGCCGGGCCAAAGAGCAGATTCTGCTGCTCATCGAAGTACAGCTCGCATACATCAACACCAACCATGAGGATTTCATTGGATTTGCCAATGCACAACAGCGCAGCAGCCAAGCAAACAAGACGAGTTCTGCCGGAAACCAGGTCATTCGCAAAGGATGGCTGACCATCAACAACATCAGCATCATGAAAGGAGGAGCTAAGGAGTACTGGTTTGTGCTGACGGCTGAGAGCTTGTCCTGGTTCAAGGATGATGAGgagaaagagaagaagtaCATGCTGCCCCTGGACAACCTGAAAGTCAGGGATGTGGAAAAAGGCTTCATGTCCAGCAAGCACATGTTCGCCATTTTCAATACAGAGCAGCGAAACGTCTTCAAGGACAATCGCTTCCTAGAGCTGGCATGCAACACGCAGGAAGAGGTGGACAGCTGGAGAGCATCCCTGCTCCGCGCTGGTGTTTACCCAGAGAAATCTTCGgTGGAGAGTGAGAGCTCTGGTACCACGGAGAACTTCTCCATGGATCCTCAGCTGGAGAGAAAGGTGGAGACCATCCGAAACCTGGTGGACTCCTACATGGCTATCGTCAACAAGTGCATCCGGGACCTCATGCCCAAGACCATCATGCACCTTATGATCAATAATGTGAAGGACTTCATCAATGCAGAGCTGCTGGCTCAGCTGTACTCGGCTGGGGACCAGAACACACTGATGGACGAGTCTCAGGAGCAGGTGCAGCGCAGGGAAGAGGTGTTGCGGACCCACCACGCGCTGAAGGAGGCGCTAGCCATCATTGGAGACATCTCCACCACTACCATCTCCACCCCTCTGCCTCCTCCTGTGGACAGCTCCTGGCTTCAGGCTGGTCCTGGCGGCTCTCGCAGGTCTCCCCCTCCAAGCCCCACTGCCCCACGCAGAATGTCCGCAGGTCAGAGGCCAGCAGGCCGGggtgctcctcctcctccgtcaCGCCCAGGGCCTCTTGGGCCCTTTAACAACAGCGGTGATAGTCCACAGGTGCCCAACCGCCCAAACCGCGCTCCTCCCAGCATTCCCAGCCGCCGACCCCCACCTTCCCCTACCAGACAGGTCCCGTAAGCTACCCAGCGGGATCCCCTCCTCCTGGACcaagcactcacacactcctcagctCTTACGTCTCATAACCCTCTGATCCCTGAGCTTCAGCTCCTGCATGTCCCAGTCTTTATCTTCACTGCTCCTAAATCATTCCTAGACTCACCTTGTGTGTGCACATTCCCCTGCAGTGCTAGTGTCCATGTTAGCCATGCTCGTTTCGTGCCGTGTCTCTGTGCCTGTGATCTGGATTGGCCAAGCAGGACTCAGGGCGAGTCCTACCAACAATAATACCCACAGTCTTTTTAGCTTCACTTCTCTAGTCTGTGAAATCCATCGTGACCATGCCGCGCTCGCGGATCTCCGATCAGAGCAGCGAGGCTCCTCGTAGTGCATGTTCCGTTTTTAAGAGTATATttttatgcgtgtgtgtgcgctcagGTGTGTGCAGGTCTTGCTACCTTGCTACgtgaataatatttttagtgagagtatgtgtgtatgcgtgcttACATCACAGTCTCCCCCGAATGAAAAAAGTCAATGAgtaaaatagtgtgtgtgtctgagttgGAGTTAAGACCAGTCTTGTGAATACACAGTCCAAGACCTTGTTGtctaaaacaaatgtttttcattaacctgaaagaaaaattaattttatgatAACGTCTAACTGACAGGTCGACTTGCAATATtctttatttgattaattatgTGATTAATTAAGTAAGTTCTAGGTCTTAGGTCTAATCTTGTATCAGTGGTTAGAAAGTTAAGGCTGGGGATAAAAATGTTACTAATCTACAATTTCTGCAGGAGTGCCTTTGAGcactattaaaaaataattagcaaaatgtttttgtaaaatgtgtAGCTTGCTGTAATTATCCATCTTGCAGCTATTCATTGGTTGTTAAGGATTACATATGGACACAAATGGGTGAcaagttaaaggaaaaacctgAACACATGAGTGAAGAATCATAACGGGTGCAGAGGTTTCCAACAATTAAATATCATGGTACAATTAACTTCCTACCCTGTTCTGTGGCATGGATAAAAATGCCGAGTATGcccatttgattttatttttggatcAAGAAGAGTCAAGAGGAATTTTGAATCAAGAGGAAAAGTCACTTTGAAAGAAGGCACAGACTCACAACAGACTCAGGAACAGTGATGTCAAGTGCCTGTAGGGACCAATCCTCAGGGGCtccaagggctcactgaatggttaaTGAGGAAGAAAGTTATGTCCATCATATGCTATGACCTTTATAGTAACCATATCTCAACCCTAACGAACACCTATGAGAGATTTGAGGGTAGTGTTTAACAGAGCTCTCCACAACCATCATCAAAAATGAGGAAGTATCTCTTGTTATTACAATGTTCGTCTCTCCAGTTCAATTCTACAGACTTGTAGAACCAATGCCatggtgcactgaagctgttctggcagctcatggtggcccaacacTTTACTAAGACACTCtgtgttggtttttcctttcatttgctTTCCATCTGTATATGATTGGTTACACTCTAATTCATGTTGTTAGATGGATGTAGTGGGACTGTTTGATAAGTAGTGAGATCAGCATCCAGACCAAGATTTGGAATATAGAGTCCACGATCCAGGCAAAGAATCTGAGTAATGATACCAAAGAACCAGACCAAGATTCAAAGTATCAAGACTATAAGTAATGTCACCTATCCAGACAGACATCCAGGTCAAAATTCTGAGTAATGAGACTGAGACCCAAACCAAAATTCGATATAATGAGACAAGCATCAAGACCAggattcaaaataatgaaacagaGATGCAGATGAAAGTTGAGAAGTGAGAAGACCAAACTACAGACCAAAATTCAGAGTAATGAGACCAAGATTGAGACCAACAAGCTGGGTAAGGAGACAGAGATCCAGACCAGTACTGACCAAGACTCAGATCCAGATCAAAATTCAGAGACATAAGACTGAGATCCGGATAAAGATTTGGTGTAATGAGACCAAAATCCAGACCAAAACTGAGAGTAAAGATACCGAGATCCAGACCAAAATTCAGAGTAATGAGTCGAGCATCCATATCAACATTCTGAGTAATGAAGCTGAGACCCAGACCAAAATTCTGAGCAAAGATCCAAAGagtgactaataataataaaaaatcaggCAAAGACTTTGTTTATGTCTGATCAAGACCACGAGATCTCAACTCCAGCTCTGGTGTGTACGTGTTCTGTGCGTTGATTCATGGTGCACATGCTTTGTTTGATGGTATGTCAGTATCAGTATGGcagtgtgtttgttcatgtgtttttgCTGTCAATGATCGGCACTACCGCTGATGTTGAAACCAGGCCCTTACCTCATCTAGTCGTTATTCTGTCTATGTGCCTGTGTCGTCGAAGCAGCCCTGTCTACAGGCAGGCTGATTAGCAAATCCTGGGACATACTTAACCTTCCAACTGAACACACAAACTTAACAATTCTCATGCATACACTTCATAGCATAACAGTGAACATCACAAGAGCTTAATAAAATACACTATCCTCTCTGCTATACAGTAACTGTGCAATGTGgcaatgtgtgtttgttacttaaaagtaataatagtgattttttttttttattagacgTTGGATAGGTAATTAATTCCGAACAGACTGCcataaagtcttcaggatggataTACAGGAAGTGAATGAATGTTACTTATGTTCGGATGTTCTTTAACGAAGATGTTTGAATGTCGTCAGTGAAATTCTTAACATCGTGTCAAATATTCACCTGTTTTTCAGCATCTTATCTGTTCGAAATCTGCATTCATTCCACAGTGGCACCTCCAGACTTTCATtatataagatgaaaaaaagggATCAATAAAACGTGTACTAGAAGTTAAATTAGATTTGTACTCGTTTCAGTGGGCAGTTGATGTGTTGTTTCTGTGGGTCTCTGTCCATTTAGTGTACTGCCGAGTCAAGCGGGTGATTTTGTTTGTACTTGAAATCTGTTTTGTTCTTATCGTCTCTTACTGTATCTCAGAATACTGATTCATACTACTATAATGGCatgaataaatctgtattgCCAAAGCTAGTCATAGAATCAATCTATATACAATATGCAACAGAACGTTACAGtgttacatacacatacacacatgcatacatatatatatacatatatataaagaaataatattgTTCACTGGAGGAAATCAAGACACTTGCCTCCGTTTTGTAAATGTGGTTCTTTTGAGGGATATGTAAACTGTATTAGTGATTATATTCCTTATGTAATTCAATAAAACGTGTTGAAGACCGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578078.1 lncRNA downstream 43752 5262484 ~ 5265109 (-) True LOC117597176
TU70747 lncRNA downstream 88175 5192160 ~ 5220686 (-) True G59788
TU70725 lncRNA downstream 96203 5195606 ~ 5212658 (-) True G59777
TU70733 lncRNA downstream 112409 5179745 ~ 5196452 (-) False G59777
XR_004578090.1 lncRNA downstream 179242 5122136 ~ 5129619 (-) False LOC117597191
TU70802 lncRNA upstream 20763 5378053 ~ 5378280 (-) True G59833
TU70811 lncRNA upstream 31140 5388430 ~ 5389298 (-) True G59838
TU70812 lncRNA upstream 32350 5389640 ~ 5391068 (-) True G59839
TU70816 lncRNA upstream 50191 5407481 ~ 5412825 (-) True G59843
TU70847 lncRNA upstream 134736 5492026 ~ 5492374 (-) True G59869
XM_026947505.2 mRNA downstream 158639 5129697 ~ 5150222 (-) True LOC113547258
XM_026947506.2 mRNA downstream 158639 5129698 ~ 5150222 (-) False LOC113547258
XM_026947471.2 mRNA downstream 204735 5100415 ~ 5104126 (-) True LOC113547224
XM_026947566.2 mRNA downstream 223710 5082808 ~ 5085151 (-) True LOC113547297
XM_034304054.1 mRNA downstream 283461 5020107 ~ 5025400 (-) True LOC117597187
XM_026947565.2 mRNA upstream 36587 5393877 ~ 5399388 (-) True LOC113547296
XM_034303676.1 mRNA upstream 53532 5410822 ~ 5426769 (-) False fggy
XM_026947561.2 mRNA upstream 53540 5410830 ~ 5426769 (-) True fggy
XM_026947562.2 mRNA upstream 53540 5410830 ~ 5426726 (-) False fggy
XM_026947563.2 mRNA upstream 56911 5414201 ~ 5426769 (-) False fggy
trnar-ucg_1 other downstream 498997 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 660981 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1052577 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 1073622 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1388730 3895201 ~ 3920131 (-) False LOC117597092
TU70820 other upstream 121252 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 542959 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 542959 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 823597 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 1086454 6443744 ~ 6443815 (-) True trnae-cuc_12

Expression Profile