RNA id: XM_026947527.2


Basic Information

Item Value
RNA id XM_026947527.2
length 2509
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC113547271
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4650694 ~ 4660380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACACCACCTCCACGTTAAGGCACCTACCATTTTTATCCAAGAGACTAAATCTGCTGAAGGTAAATTctgagagagcaagaaaaaggaaaaaagagacaggGGAAGAGAGTTATGGCTTCCTCTAGCAATCTCTTATATGAAGAGCAGCTCCAATGTTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTATGATCTGTCTCAAAGAGTTCTGGGACACCAGTTCACATTACCAGTGCCCAATGTGCACAGCAGATTTCCCCAAAAGACCTGAGCTCCgtgtaaatacttttatttctgaactgAGTGCTCAGTTTAAGATATCAGTTCAGGTGAAATCCAGCAGCACTGCAGATCAACCTTTGTACCTAAAACCTAAAGGGGTTCTGTGTGACACCTGCACTAAGGAAAAGCTGGAGGCTCTAAGGTCCTGTCTGGACTGTGGGGTTTCTTTTTGTATTACTCATCTGATGCCTCATAAAACTAcagctaaattaaaaaaacacaaactgattGACCCtgtggagaacctggaggactACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTACAGATgaccagatgtgtgtgtgtcagttctgTATTTTGGGAGACCACAAGAATCACAACACTGTTCCTATGGAGGAGGAGAGTCAAGAGAAGAAGAATCACCTCGTGGAGACACAGAAACATGTTCAGAAGATGATCCAGAACCGACAGGAAAAGATTGAGGAGCTCAAACAGTCTATAGAACTCAATAAAaaacacacagagaaggaaaaaacagaaagcatgaAGATGTACAGTTCTCTGATGCGCTGTATTGAGAGAAGCCAGGTTGAACTGCTTAAGGTGATGGAAGAAAAGCAGAACGCAACAGAGAGGCAAGCAGAACAGTTCATTAGAGAACTGGAGCAGGAGATAATtgaattaaagaagaaaaacaatgagATGGAGCAGGTCTTACATACACAGGATCACCTCAAGTTTCTACAGATTTACCCTTTTCTGCATGGACCTTTACACAGCAACAATTGGAATAATGTCAGAAATAATTCTCATCTGAATATGGAGACACTGAGGAGAGCTCTGCATCAGCTTCAGGAGTCTCTCAATGAGGAGATGAAAAAGCTTCCAGAGATTGAACTGAAGATACTTCAACAATATGCAGTGGAAGTGACTCTGGATCCTGATACAGCAAATTCTAAACTTATCCTGTCTAATAATAGGAAACAAGTGAGATATGGCAACAAAGGACAGAATGTTCCTGATAACCCAGAGAGGTTTAAGCGTTGTGTCAATGTGCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTACTATGATGTCCAGGTCAGAGGGAAAACAGCTTGGGATTTAGGAGTTGCCCGAGAGTCCATTAACAGGAAGGGGGAAATTACATTCAGTCCAAAGAATGGATACTGGATTGTAATGCTGAGAAATAAGACTGAATATAAGGCTTGTGAATCTCCCCTCATCCCCCTTACACTGAAACAGGCTCCTCAGAAGGTGGGGGTCTTTGTGGATTATGAGGAAGGTTTGGTCTCCTTCTATGATGTTGATGCCAAGTCTCATATTTACTCTTTCACTGGTCAGACTTTCACTGAGAAACTCTATCCATTCTTCAGCCCTTGTCTTAATAATGGTGGTAAAAACTCAGCACCGCTGATCATCACGTCTATTGAACATTATTTTTCCACAGAAACCAACTTTACAGAATAAGAGTTAAACCAATACACTCCAAAACTACACAATTGCTGTTAAGGTTAgaagttattttatattattttatttgatgtctgcaattaatagaaaataaattacataattgAATAATAGTTTGTGGACAGataattttgtcttttgtctgatgtgtattaataaaaataaatttcattcaaaaatcaatcaaaattgTAACTATAGAGAATCTATCTACATAATATCTTAATTGTTAAGTCtgttaaaaattgttaaaaccTGATTTATTTAGGTTTCTATTGTTGTCTGTTCTCTGATATACACTTTAACctgtttaatgttaatgtgaaaGAAAGGCAAATCTTGTCTATGGAGATTAGTAATAAACATGGTGAAATCTTTTGCAATGAAAAATCAAGTGTTTGTAAATATAAAGTAGTAAATATAGTGAGACCTTCACAGGTTATGTGTATGTTAATATCTGATACGGTCATGGGGAAAAATGAAAGTACACCTTCCTTTAATTCTATGTTTTAGTTATCAGGACCTAGATAACAGTTGGGTGGTCCTCAACTTCTATaaccaaacaaataacctcaggtgacaacaacaataacaacaacaacaaaaaaaaccccaacagaTTTCATGTAGCCATTTTTCTCTCATAAGTAAactaacattcagaaaccaggtgggaaaaaaataaatacaccctataattcagtaacatgtagaaccaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70266 lncRNA downstream 58014 4580941 ~ 4596531 (-) False LOC117597175
XR_004578075.1 lncRNA downstream 58016 4593407 ~ 4596529 (-) True LOC117597175
XR_004578076.1 lncRNA downstream 62777 4590344 ~ 4591768 (-) True LOC113547239
TU70264 lncRNA downstream 91050 4562924 ~ 4563495 (-) False LOC117597059
TU70259 lncRNA downstream 94035 4559733 ~ 4560510 (-) True G59385
TU70281 lncRNA upstream 16785 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA upstream 16785 4677165 ~ 4678736 (-) False G59398
TU70282 lncRNA upstream 17179 4677559 ~ 4678736 (-) False G59398
TU70306 lncRNA upstream 97051 4757431 ~ 4757765 (-) True G59416
TU70478 lncRNA upstream 209780 4870160 ~ 4914451 (-) True G59559
XM_026947529.2 mRNA downstream 6786 4642020 ~ 4647759 (-) True LOC113547272
XM_026947531.2 mRNA downstream 14261 4634325 ~ 4640284 (-) True LOC113547273
XM_026947466.2 mRNA downstream 21280 4613028 ~ 4633265 (-) True LOC113547217
XM_034304010.1 mRNA downstream 44983 4605172 ~ 4609562 (-) False LOC113547216
XM_026947532.2 mRNA upstream 2760 4663140 ~ 4672185 (-) True LOC113547274
XM_034304061.1 mRNA upstream 18359 4678739 ~ 4729122 (-) False ube3c
XM_034304060.1 mRNA upstream 18359 4678739 ~ 4729122 (-) True ube3c
XM_026947582.2 mRNA upstream 98269 4758649 ~ 4769871 (-) True nom1
XM_026947580.2 mRNA upstream 206101 4866481 ~ 4878229 (-) True c8a
TU70276 other downstream 6665 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 398261 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 419306 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 734414 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 929980 3710571 ~ 3724565 (-) True LOC117597100
trnar-ucg_1 other upstream 149412 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 818162 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1239869 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1239869 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1520507 6180887 ~ 6180959 (-) True trnak-cuu_3

Expression Profile