RNA id: XM_026947534.2


Basic Information

Item Value
RNA id XM_026947534.2
length 2436
RNA type mRNA
GC content 0.52
exon number 11
gene id gpaa1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6740573 ~ 6755800 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTACCTGGCGGGCATTGCCTGGTTCATGGGCCTGGCATTTGAGCCGTTCACTCTGCGGACGTACATGTCGGAGAACGCAATGGGTTCCACCATGGTGGAGGAGCGGTTCCCCTCAGGAGAAAGAGCCTTGGCTACTGCACGGGAGTTTGCAGCTCATAAGAAAAAGGTTGGGGCATGCCGGTGGACTGGCTGGTGAAGACGATGCAGGCCAGAGGGCTGGAGGTTTTCACTCAGAGCTTCTCACGCACTCTGCCTTTCCCTGATGAGAGCAAGGAGAGATTTatgGTTCGAGGCACCAATGTGTATGGGATCTTGCGAGCACCTCGAGCTCCACGAACAGAAGCCCTGGTTCTCAGCGCCCCCTGCAGTCCTGGCAACAGCAACAACCAGGCAGTGGGCCTTCTGCTGGGTCTCGCCCAGTATTTCAGAAGTCAGATTTACTGGGCTAAAGACATCATATTCCTGGTGAATGAGCATGATCTCATTGGCATGCAGGCTTGGTTAGAGGGCTACCATCACACCAACATCACTGGGATGAGCTTCACGCCACTACAGGGCAGAGCCGGCTCCATCCAGGCCGCGCTCTCACTGGAGCTCAGCAGTGACGTCATCACCAGTCTGGACCTGGTACTGGAGGGACTAAATGGGCAGCTTCCCAACCTGGACCTGGCCAACCTCTTCCACGCCTTCTGCCAGAAGCTCAGCGTCCTCTGCACCATTCAGGGGAAGCTTCAGAGGAACGACTGGGACAGTACAGAGGGTTACACTCACGCTGCACAGACCATGATGCTGATGGTGCTGAAGCAGGCGAGTGGTCGGCCCTGGGGTGACCACGGTCTCTTCCTGCGCTACCACATCGAGGCTGCGACTGTCCGCGGCATCAACAGCTTCAGACACTACAAGACTGACGCCACCACTCTCGGCAGGTTGTTGGAGGGAATGTTCAGGAAATTGAATAATCTCCTGGAGCGACTTCACCAGTCCTACTTCTTCTACCTGATGCCTTCGCTGTCTCGCTTTGTCTCTATTGGATACTACATGCCTGCGTTTGGCCTGTTGGCTGCCATCTTGCTGCTGCGAGCGTTGGATCTGTGGGTCCAGATTGGGAGTCCAGCTCCAGTAACCCAAGATGGAGTCGGTGAAGTAGAACCGCCGTCTAGTCCGGGTGTCTTGTCCGTGCTGACTCCGATAGTGATCAGTCACCTGACGGGCGTGGCTCTGTACACCCTCCCCATCCTGTCTCAGGACATGGCAGTAGAGCACTTCCCCGTGTCCGAGACCGAGGCCGTGGTTCTCACCGCCGTCGCCATCTACACTGCAGGCTTGGCACTgccccacaacacacacaggttgaTCTCAGGCGAGGGCACAGAGCAGGGTTGGCGGGTGCTGAAACTGGCAGCTCTACTTTACCTAGCTGTGCTGCTCGGCTGCACGGCTCTCATCAACTTCTCCCTGGGCTTCCTCCTGGCCGTCACGCTGGTGCCTGCTGCTGCCTGCGTCACGCCACACATGCCCAAGTCTTTAGGTGCCTTGGCGATGGTGCTGCTCAGTCCAGGCTGCACAATCCTCTACTGCATCTTCCTCTTCCAGGACCTCCAGGAAGCGCCGGTCACGCTGCCTGAGTGTTGTGTGCTCTTCCTGTCCGTCATCTCTCAGGGCATCCTAGACCACGCCCTCTACGGTTCGCTGGTCTACCCGCTGTTGGCGCTGTTTGTGTATCCGTGCTGGCTGCTTCTCTGGAACGTCCTGTTCTGGAAATAACGAGATGAACAAACTGAGCCTGTAATGTGTCTGTCAGGGAAACAGATCAGAGCACTCAGCCTGCCTTGGGGTGCACCTGAGAGGCAATTTGGGGGAAACGAGGCATGGATTAACGAATGTCCATGAAGGGAGTGGTCAAGAATATGGGAGGAGCTACTGAAACATAAGACATAAGAAGATAAAAATTACGGAGGACATTTTCTCCTGCAAGCTATTTCTTTGTatgttgtttgtatttgttttaggAGACTACACAGGAAAGTTATTTGTTTAACACTGGAAGGAAacgtaaatatgattttttgaAAAGTACGCATCAGTGTTTGTCTGGGTACCCGATGCTTCAGAACAGCTAGCAGGAATCACTGAGTGTTGATACTAATGGCACATTACACTGTGTGAAAATGCAGCTACAAAGAGAACAAGTTCACATTTAAGCCTTACTGGCAGCAGGTAGCTGATAAACGGGGTACTTTTCTCTTATTAATGTGACGAGCTGTTCTGAACAAAGTAAATGAGGCACAACATCATGAAGGCAAGCATACAGCACACTAACCCAACCTGCAgttttggttttctttcttgGCAAATCTGTTCTgagttgaacatttttttttcatacttgatttgaaatgtacttttttgttaataaaatgcCTAAAAACTGAAA

Function

GO:

id name namespace
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71586 lncRNA upstream 56843 6684336 ~ 6685832 (+) False LOC113547228
XR_003404802.2 lncRNA upstream 90829 6648782 ~ 6651846 (+) True LOC113547233
XR_004578118.1 lncRNA upstream 119024 6622836 ~ 6623651 (+) True LOC113547253
TU71549 lncRNA upstream 146074 6595126 ~ 6596601 (+) True LOC117597080
TU71422 lncRNA upstream 316331 6426119 ~ 6426344 (+) True G60384
TU71609 lncRNA downstream 33420 6789220 ~ 6797109 (+) True G60529
XR_004577961.1 lncRNA downstream 46656 6802456 ~ 6805176 (+) False LOC113527002
XR_003402827.2 lncRNA downstream 48067 6803867 ~ 6805176 (+) True LOC113527002
TU71618 lncRNA downstream 54366 6810166 ~ 6812401 (+) True G60536
TU71634 lncRNA downstream 121231 6877031 ~ 6895222 (+) True G60548
XM_026947535.2 mRNA upstream 5476 6733584 ~ 6737199 (+) True LOC113547276
XM_026947537.2 mRNA upstream 22959 6713807 ~ 6719716 (+) True LOC113547278
XM_026947536.2 mRNA upstream 29374 6708381 ~ 6713301 (+) True LOC113547277
XM_034303770.1 mRNA upstream 38329 6684801 ~ 6704346 (+) False LOC113547228
XM_026947458.2 mRNA downstream 3601 6759401 ~ 6768736 (+) True sharpin
XM_026913759.2 mRNA downstream 481270 7237070 ~ 7334917 (+) True LOC113526581
XM_026914101.2 mRNA downstream 641010 7396810 ~ 7405618 (+) True LOC113526768
XM_026913509.2 mRNA downstream 667760 7423560 ~ 7442254 (+) True LOC113526462
XM_026913850.2 mRNA downstream 726428 7482228 ~ 7530675 (+) False ss18
XR_004578001.1 other upstream 146114 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 312098 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 599038 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 603303 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1146549 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 1300256 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1939552 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2138670 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 3002660 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 3051521 9807321 ~ 9832280 (+) False gal3st3

Expression Profile