RNA id: XM_026947540.2


Basic Information

Item Value
RNA id XM_026947540.2
length 3005
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC113547280
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5783658 ~ 5824929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGGAGCTGCTGCGGTTTCAGTGCTGCGCTGAAGCCCCGGATCACGGGCAGCTTTTCCACCGCTCACCTGTGCTAGAAAACCGAAATGAGATCTCAGGTGTGTTTCTGCTAAGCGCTAGGGACGTCTGAAGGTAGTGGGGGATAGATTCGTGGCGGAAataattggatttaaaaaaaaaaggaagccatATTTCTGCGTCCGCGCTACCGATCCGGTTTCTCCTCCATGCTGAAGTCGGCGAGCTGTGGTATGGCGGCTTGCGCCCCCGGGAGTCGCTTTAACGGCGGAtacaccagcagcagcagcaccagcagcagcaccGCCGCGCCCGCGCCGCCTCCGGCTCCTGCGCACAAGGCCAAGCAGAAAGGCTTCTGCCTGGTCAGGATGATGAATCTGAACGGGAAAAAGGAGAACGCAGATCCGCGGAAACAGCAGCACCAGCACGGCACCGTGCCCTTCATCATTCACTGCCACATCGGTAAAGAAATCAAGCACATTTGCGGCAACTGCAGCCGCGCCACCGACGCGCAAGACGCGGAGGAGGTGGAGCGGCTGGCTGCCATGCGTACAGAGTCACTCGTGTCCGGGACGCACACGCCACCGATTCGCCACAGGAGCAAGTTCGCCACGCTCGGCCGACTTTTCAAGCCCTGGAagtggaggaagaagaagagcgAGAAGTTCAAGCAGACCTCAGCAGCTCTGGAGAGGGAGATGTCGGCGAGACAGAGCCGGGAGGAGCTGATCAAACGAGGAGTGCTGAAGGAGATCTTTGAGAAAGactcgAGGATGGCTGTAGTGAAGCAGGAGGTGAGGCTGGAAAATGGCCTGTGTGCGACGCCCAACCCTTTAGAGAGCAGCCGAGCGACAGAGCTGCTCCTGCAGGGACTGACAGACGGCCACGGAGCGGCTCCTATTGAATTCCGGGCCTCCATGGAAGGCAGCGTTTGTCCTCAGGACCCCTCCCTGAAGTCGTCCCTGGTTCTGCCTGCTAAGAAATCAGTGGTTTTTCCAGGTGAGGTTCAGGAGAACCCTGCGAAAGCCGTGCTCTTCCACAAGCAGCCGCCCGCTCTGCCACCGAAGCCTTTTACCCGGCAGCTGAACCACAGCATAGAGCCATGTCAGACCCTGAAGCTGCCCTGCGTTCAGGGGAAacactctcctcctcttcctcctaaGAAAGTGATGATCTGCGTGCCATCCGGAGGCCTGGAGCTGCCCGTCTCCTCCCCGAGCCCTCTCGCCACCTACCCCGGGAAGTGCACTCCCATAATGCACCACGGCAGCCTGGGGGGGCATCACGGACACCCGCACCAGCTGCAGTACGGCAGCGTGCCCAGCCGCATCATCGAGGAGCTCAACAAGACGCTGGCGCTGTCCATGCAGAGGCTCGAGAGGTCCGTCTGGGGCTCATGCAGttctgcattgcattctgggcaGTGTGGTCTTTTGGAGAGCAGGCCGGTACCCACGGTGGTGATCGACTGTGAGGACGATAAGGAGAACATGCCCAGTGAGTCAGACTACGAGGACTTGCCCAGCATGTACAAGGACGACCTGGAGGAAGAAGACGAGGAGGACGATGAAGAGGACGACGACTCGCTATTCacaaaTACTTTAGCCCTGAAGGTGTTGAGGAAAGACTCGCTGGCTATAAAGCTGAGTAACAGGCCATCTAAAAGGGAGCTGGAGGAGAAGAACATCCTGCCCATGCAGACGGACGAGGAGAGGCTCGAGTCCAGACAGCAGATCGGCTCCAAACTCACACGGAGACTGAGCCAAAGACCCACAGCAGAGGAACTGGAGCAGCGAAACATCTTGAAACCACGGAATGaacaggaggagctggaggagaagAGGGAAATCAAACGGAGACTTACGCGCAAGCTCAGCCAAAGGCCCACGGTGGAGGAACTGCGGCAGGCCAAGATCCTGATCCGCTTCAGCGATTATGTAGAAGTAGCCGACGCTCAGGACTACGACCGGCGGGCTGATAAACCCTGGACACGCCTCACTGCTGCAGACAAGGCTGCCATACGGAAGGAGCTCAACGATTACAAGAGCACGGAGATGGAAGTGCATGAATCCAGTCGCCATTTAACCagGTTTCACAGGCCGTAGACGAGCGCGTAGACGAGCGCGTGGACGGGACCGGAGTGCTCGTGCTGCACCTCGTTCACTCCGAACCACAAGTGCTCGTCAAATCGATGGTGCACGAAATCACACTAAAAGCCAAGTCCTTGAGAGGGAGGGGGCAAAAATGTATGCCTTTTACAAAACCCAGGACGTCGCCCCAAAACCTCACCAGCCTGAAATTTtgctgtaaggaaaaaaaaacacaccgtGGTAGGAAAACGTGCGTGTTTTTGCCATGAACAAGCCTGGAAACGGCTTTTCATGCGTTGACACGTCTACTTCTTTTCTGATTcacgttttttttgttgttttttcatccaCACACTCCACTCGCTGTTCATGTTTTCTCCCGGATGGTCAGAAGATGGCGCTGGAACCACACCGGCTCAGATGGAATGATTTCATGTGCAATATGTGAATACGTGTTCTGATCATCGTTTCTCCGGCACCCTCTGCTGGCCAGCAccattctacacacacacacacacacacacacacacacacacacacacacacacacacacacacgctcgctcgctcgctctcaCACTGTACAGACTCTATGGACCTCTGCAGCAAACTGTGAGCGGCGGAGCTCAGACGGCGCTTTGTGCTCTCGCCTCGTGTACATGATGTTTATACCGGATTATTGAGTAGAATATTTTAAACGtgtaaaatgcattattatacaAATAAGGAATGGAaacctttatttaaataagGAAGGGCTTGCTTGAGGGTTGGAGGATGCAGATatgtatatgattatatatgaacagtatccattttgtttttgctgtttgtgcatctgtttgtttttaaataattatttataatatttttatttaattataaggctgcctt

Function

GO: NA

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70979 lncRNA upstream 56217 5726602 ~ 5727441 (+) True G59993
TU70976 lncRNA upstream 57990 5725446 ~ 5725668 (+) True G59990
TU70891 lncRNA upstream 226799 5556591 ~ 5556859 (+) True G59908
TU70647 lncRNA upstream 227960 5554950 ~ 5555698 (+) True G59707
TU70688 lncRNA upstream 291197 5492201 ~ 5492461 (+) True G59745
TU71017 lncRNA downstream 17846 5842775 ~ 5843074 (+) True G60029
TU71021 lncRNA downstream 28740 5853669 ~ 5853888 (+) True G60033
TU71024 lncRNA downstream 72970 5897899 ~ 5898990 (+) True G60036
TU71239 lncRNA downstream 318603 6143532 ~ 6143802 (+) True trnat-ugu_2
TU71260 lncRNA downstream 383173 6208102 ~ 6208314 (+) True G60232
XM_026947556.2 mRNA upstream 187433 5579796 ~ 5596225 (+) True LOC113547291
XM_034304112.1 mRNA upstream 228992 5506701 ~ 5554666 (+) True LOC113547279
XM_026947568.2 mRNA upstream 317539 5449482 ~ 5466119 (+) True angptl1b
XM_026947542.2 mRNA upstream 349938 5431236 ~ 5433720 (+) True LOC113547281
XM_026947549.2 mRNA upstream 373443 5402284 ~ 5410215 (+) True LOC113547286
XM_034303668.1 mRNA downstream 4877 5829806 ~ 5901415 (+) True phlpp1
XM_034303604.1 mRNA downstream 94714 5919643 ~ 5928583 (+) True LOC117597064
XM_026947473.2 mRNA downstream 166999 5991928 ~ 6009784 (+) True dusp22b
XM_026947555.2 mRNA downstream 189991 6014920 ~ 6037232 (+) True irf4a
XM_026947455.2 mRNA downstream 337224 6162153 ~ 6163840 (+) True foxq1a
TU70896 other upstream 187532 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 595612 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 775525 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 828196 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 1075260 4707442 ~ 4708398 (+) True G59366
trnat-ugu_1 other downstream 314371 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 318636 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 605557 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 770197 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 2231127 8056056 ~ 8062839 (+) False LOC113526345

Expression Profile