RNA id: XM_026947542.2


Basic Information

Item Value
RNA id XM_026947542.2
length 2485
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC113547281
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5431236 ~ 5433720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAACAAGGCACCAAAAAACTTTGTTTGCACGTCGGAAGTGAGAAGATGTTTCAGGATCGTGCTCGAAACGGAGGAAAAGTTTCCAGGGAAAGTTGCTGCTGGTGTTGTTTTGATGATCGGATGCAGTTTGAAGGTTGAACATTTGAACTTTTTACGGCGCGCGGGTTCGgggtttggttttgtttttacgCGCAGAACATCACATCTCATCACATCTCATCACATCTCCCCGCGCGCGCTGCACAAACTTCACACCTTTCAACTTTGCAAAAATGGATGGTTTGTTTTATAATGAAGCTCTGGATGGGGTTTTaaaccaccaccatcatcatcaccttcatcatcatcatcttcatcatcatcacggcGAGGCTGGAGGGAACGGATACGAAACCCTGACGCGCAACATGAGCCTGAACCTCGCCGACGCGCCCGACGCGCTCACGCTCACGTCCCCAGACCTCCATTTACTCAAACTCACCTCCCCCGAGCTCGAGCGACTCATCATCCAGTCCTGCAACGGCTTAGCTCCGACAGCCCCGGCTTCCGGTCCGGCGCGCGCTTTCCCCGCTCCAAAACACTCCGCGGACGAGCACGATGCCTTCGCCCTGGCGGAGTTCCAGTGCCACCAGAGGATGTCCAGTAACCCCGAAGATGTGCCACCTGTAGCCACGGCATCGTCTCACGCCTGCGCCGGGTTCGCAGAGCACCTGAACCCCACGTGGGACGCGTACACCGACGCGCCGCCGTGCGCTCCTCCGCAGTTCAGCTGCGCGCCGGCGCTCAAGGACGAGTCGCAGAAAGTCCCCGAGACGCCGCCGCTGTCTCCCATCGACATGGAGGACCAGGAGAGGATCAAAGCCGAGAGGAAGCGCATGAGAAACCGCGTGGCCGCCTCCAAGTGCCGGAAGCGGAAGCTGGAGCGGCTCGCGCGGCTGGAGGAGAGAGTGAGCCGGTTAACGGGGGAGAACGGAGAACTGCGCGGCGCCGCCGAAACGCTCAGAGACCAGGTCGCTCAGCTCAGACACCAGCTCCTGGACCACATCAAGAGCGGCTGCAAACTCCTCAGCCAGCAACTGCAGACTGTCAAAGAGTTTTAAAGGTGCGgttcgtctttttttttttttttttgtcaatacCTGTAAGGATTTCAAAAATACCTTAGAAAGAttgcattcaaaaaaaaaaatgccatgctagttttttcctttcatttcaagCTTccgtttacattttttttttacatttctttctggTCCGGAAATGAGTTCCACCCCCAGCTggatctgccttttttttttttttttcccctataatGCACCTTGCTCTGCACATGTACTGTAGTTTCTCCACAGCATGCGGAGTTAGACTCCAACATTTTCACTCCTAGACATCAGGGGTGTCTAAAATGACATACCGCTCCTTTAATCTTTCAATCAGACTgcactgtggatttttttttattattattataaaatctcGTCTTCCAGTGTCTAAAGGAAGTTGTTTGTGCTAGACTGTTTTATAGACGTATTCGTGGGTGGCGCAGACGGAATCGTTGCCGCCTCACAGGGTCCGGGGTcggatcctgagctcgggtttcCTCCGGCttttccagtttcctcacagaaatatgctggtgactctaaattggccctagatgtatatgtgtgtgtgtatggtgtccAATCCAGGGTGCATTCCCACCTCAGGCCTGGttttcccgggatagactccggattcGCCACAACCCTGACCTCTATTAAGCACttactgaatataaatgaatgaatttcataTTAACATGTGATGTCATgtcatttttccccccacttaTCTTTTTACTAATATAgagttttgcactgtttttagGTTTTCTACAATCTTTGTCCTacattgtacaaaaaaaatgatgtgtaaacatattttatattatcaaTCAACCTGTACAAGGGGTTGTTTTTTGCCCAGGTCACCTCCTGTATGATGATTAAACAGTGACACAATGCTCCATGTACAAAAGCAACTGTTACACACTTTCAgtgcaattaaataaatagagcTTTTTAAAAGGAACGAAAACGTACttgtgtatttaacatttaacatgatTGTGAATAGGCAAATGCTGTAGAATTTTAAGAGGAGCCACTTTTTACGATCATGCATGTGACACACAGGAGAGttaggggaggaaaaaaaggctTGTACATTTCGAAACTGTTAGATTTCTTTAGGTTTGAAAGCAGATTAAATGACACTGTGGGAATGGAGTCAGAATGGTCAATTTTTCATCAATATCAGATATTCATTATCTATAGTATTGATGGGGCATGCGGGTCACAacacaattttaaatgtaaaagaaatgaaaactttATACAATAGATCTGCCATTAAACAAGCATGTAACTATAGTTTCATAtctatacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaaga

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K04448 JUN; transcription factor AP-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70665 lncRNA upstream 1614 5429281 ~ 5429622 (+) True G59725
TU70634 lncRNA upstream 39811 5390911 ~ 5391425 (+) False LOC113547289
TU70598 lncRNA upstream 61780 5301882 ~ 5369456 (+) False G59663
TU70597 lncRNA upstream 67348 5301882 ~ 5363888 (+) True G59663
XR_003404806.2 lncRNA upstream 165222 5264016 ~ 5266014 (+) True LOC113547270
TU70652 lncRNA downstream 4124 5437844 ~ 5438721 (+) True G59712
TU70688 lncRNA downstream 58481 5492201 ~ 5492461 (+) True G59745
TU70647 lncRNA downstream 121230 5554950 ~ 5555698 (+) True G59707
TU70891 lncRNA downstream 122871 5556591 ~ 5556859 (+) True G59908
TU70976 lncRNA downstream 291726 5725446 ~ 5725668 (+) True G59990
XM_026947549.2 mRNA upstream 21021 5402284 ~ 5410215 (+) True LOC113547286
XM_026947553.2 mRNA upstream 39407 5388368 ~ 5391829 (+) True LOC113547289
XM_034303601.1 mRNA upstream 124695 5286357 ~ 5306541 (+) True LOC113547263
XM_034304016.1 mRNA upstream 178387 5240683 ~ 5252849 (+) True LOC113547265
XM_034304017.1 mRNA upstream 178387 5240683 ~ 5252849 (+) False LOC113547265
XM_026947568.2 mRNA downstream 15762 5449482 ~ 5466119 (+) True angptl1b
XM_034304112.1 mRNA downstream 72981 5506701 ~ 5554666 (+) True LOC113547279
XM_026947556.2 mRNA downstream 146076 5579796 ~ 5596225 (+) True LOC113547291
XM_026947540.2 mRNA downstream 349938 5783658 ~ 5824929 (+) True LOC113547280
XM_026947541.2 mRNA downstream 349938 5783658 ~ 5824929 (+) False LOC113547280
XR_004578077.1 other upstream 243190 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 423103 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 475774 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 722838 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 778115 4650477 ~ 4653121 (+) True LOC117597167
TU70896 other downstream 146424 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 705580 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 709845 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 996766 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 1161406 6595126 ~ 6596561 (+) False LOC117597080

Expression Profile