RNA id: XM_026947547.2


Basic Information

Item Value
RNA id XM_026947547.2
length 3309
RNA type mRNA
GC content 0.48
exon number 21
gene id si:ch211-188c16.1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4879800 ~ 4894423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGATGAATGGGCGCGTGCACGAGCTTTGAGTGGTTTGTTAATGAGGACGCAGAGGCGGTGTGACCTTCTCCCCTGATCATTCTCATCAttctcatcatcattatcagCATCATTAGTAAATGAAGAGAGGAAATCAGAATGGAGGCTGCCATTGATTTCAAGTCCCTCCGGGCAAAGTTTCAGGAGGGGGGCCAGCTGAAACAGAGACCTGTGGTTCTGGATAAACCAAAACGCTTCCCACCTATAGCAAGTCGTGGCAGTTATTTACCTAATTCTGCTGTGGAGAACAAAAATCCTGCTATCTCACACTTTAACTTAAGAGATGACCAAAAGATCTTATCAGGGAAACCGCCCAGTGCTGTGCCATCTTGTTTGATTCCACCTGACACGAATGGCGTTGGAAGTAGTGTTGCAAGACGCTCGTTCAAAGATCGTCACTTGCCTCTTGTGCTGCCTGCATCCTCTTCCTGCTCTTCTAACAGTCCAAAGCAGGAGGCCAATGCTTCCTCCAAGCTGGTCACATCACCAATCAATTGCAAGAAGAAGGCCATGCCGACGCCATTCAAGCCTGCCAAGTTTCCCAAGTCCATTAAGGACATTCTGGAAAATGCAGAACATCCTGAAAGCAGCAAGCCACAGTCTGAACATTGTATTGTCGAGAACGGATTCAGCCCTTGCAATGGGGGGTCAAAACCGGGGTCATCCTGTCCAAGCCCAGAGCagccatcaacaccatcacctACAGCTGAAGATCCATCCAATGAGGGTAGCATTCCTCATGTCCTCAGCACTCTGGAGAGAGCCAAGAAAAAGTTCTCACCCAAGAACCTCCTGGTCTATACTCGACCCAAGAGCTTCTACTCCAGTAAAGGACCGACAGAGagccctcctcctcctcctcccctcctcctcctcctccctcctctagAGTATGAAAACCTTCAGTGTGATGCAGAATCTTCATCTCTGAAGTCAGGATATCGTCCTGCTCTCTCACCAACCCTCACTGCCCAAAATCTACCACAAGCCAATGGTATAAATCATAgacCAGGACCTGTTGTGCACCTGAACGGTGATATGAAGCCAGTACGGCCTGGTGCCTGTGTCCCTCCTCTTGTTAAAGCCCTGCCAGACATGACATCACTGGGGTCCCTGCCCAAGAAACCACCGAGACCACCACATGTCGATTTGAGTGCTTACAGGATCCAGAAGCTGGAGAACACAATGGAAAAAGCCTCCATGAAACTGGCTCCTGGTTCAGGCAGTGTAGCTGCTGAAGCTGTGAATGCTGAGAATACACCAATGCCTCCACCTCCTCAGTTTGATGCTCCTCACTTCCTAGATTTTGCCAGTTCTGTATTAGAAGCGTTAAACACCAATGTAATAAATCTTGCTGCTCTGGAGATGGAGGCTACAGACTTTAGTGCCCCACCACCAGGACCTGAAGAGGCGAGTGATGGCAATCTTCACAACGATGTGATCCAGAAGCATGTTGTAGATCCCACAGAACTGGCAGATGGTAATCTGCAGGGATCCAGTTTAGGGCATGTGGCTGATGCACAGTCAATCATGGTACTTGAAGCTCAGCTCATGGAAGCTATGACCACAGACATCTCGATGAACTGTCCTCAGAACGTACTGACCGATTCCTACATCAGCAGTGAACTTCCATCTGAACCAAGcaTCAACCAGCGGGACGATCTTTACGAAAACTGTGACAATGTCTACGAAGAGGTGGAGTCAATCAGCAAATTCAATTTTGGGCAAAACTCCCGCAAACGGAAGGGAGCTCCAAAGAatCCCTATGCTGAGTCACCAGGGAATGAGGATACACGCAAGAGTGTATGGCATGTCGCACAGTGGATGAATGTGACTTCTGAACCCAATGGTGTGACTCCTGCTCGCTGGGACAGTGCTTCATGTATCAGGAAGGAGCGCTCGAGCCCTGACCATCATGAAGAGAAAGAGGCACGGAAGAAAGAGAAGCAACGTTTGGGGCGAGAGAAGAAggagcagaaagagaaggagaagaaggaaaatgagatgaaaaagAAGTTTAAAATCACCGGACAGGAGGAGCCCATGTATCATGCTCGTGTGCTGCTGGGCAGCAAACTGCGCAAACATGACCTACAAGTGAAGAGCGGAGACACGGTCAGCATCATCCGCACCACCAACTGCCCCAAAGGCAAATGGCTGGCCAGGGACTCGCAGAACAAGTatggctATATTTCAGTGATGAATGTGGAGTTGAATATGAAGGAGATGTTGGAGTTGGGGAAACGAGCCTCACAGGCTATCGGGAGAGGACACGGCGAGGCCGACACACTCAGTCTCAGCAGCAGGTCTTCACATTACAACCCGGTTCTCACAAGCAGCTTTACTGATGATAGTGAGGAGTGGACCGGTGATGATGAAACCCTGTCTCATTTACCAGAAAACACGTATCCAAACAGGGCGGTCTCAATGCCTGATATGTTTAACGCTTTTGCCAGTAATCACCATGCTCCGAGTGTCAGCAGTGTGGAGGACGTTCCCTCACAAGTGAATCATGAAGCTCTCCAGAAGCTTGCCGTTTTCTTCCAGAACACCAAAGATGACCTGAACACTGTAACAGAAATCGCAGACCCGATTTCTACCAACATTAATGGTCCAGGTTTGCTGTGTGACGTGGAGGAGCCTCCATAtgtTGAGGAGGACCAGTTCAGTTTCACAGACGTCGAGCTGCTgcctcctcctgaactctacgcCGACTCTGTCTGAACCATCAGGTGATGGTTGAGGTCAGTGCATGTGAAGCCAGACCTTTGTGCTCTGTTACTCCTCTGTTAAACCGAAATCACTGGAACTCCACACTGGTCCTGTTATGATTTTGTCTTTCAGGGGAGCGATGCCATTTCTACACTTCTGTTACACACTCCAGGCTCCTGTTAGCACTCAGGAAATACAGTCCAGTTCTCTGAGAGCTGctattgctaatgctaatactaCACAAGCATACGTTTCAGACTGTTCGACTAAACACTGAACTCTTCTagccagaagtgtgtgtgtgtgtgtgtgtgtgatttcactTCAGCTGTAAAGGAAAGCAGTGTTAAATAGTACATTAataaaagagtgagagagagtgtagcACTTTATGGGTGTGTATTATATCTGAATGTTACACCTTGTTTGGGCTGTGAAGACTTTGCACCATCTTGTATGAACTTGCTTTGCGTTTTCATTTGAACACCCTTTTGGTTCATGATGCCGTGTTTCTGCAtcattttgtttccttttatgtttgtattaaaactcatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70199 lncRNA upstream 181005 4677167 ~ 4698795 (+) False G59329
TU70198 lncRNA upstream 199561 4677167 ~ 4680239 (+) True G59329
TU70216 lncRNA upstream 208340 4670980 ~ 4671460 (+) True G59343
TU70215 lncRNA upstream 209717 4669863 ~ 4670083 (+) True G59342
TU70213 lncRNA upstream 213345 4666012 ~ 4666455 (+) True G59340
TU70374 lncRNA downstream 55877 4950300 ~ 4950651 (+) True G59478
TU70375 lncRNA downstream 57948 4952371 ~ 4952598 (+) True G59479
TU70379 lncRNA downstream 63639 4958062 ~ 4958314 (+) True G59483
TU70396 lncRNA downstream 99066 4993489 ~ 5014813 (+) False G59492
TU70430 lncRNA downstream 117497 5011920 ~ 5017802 (+) True G59521
XM_034303595.1 mRNA upstream 13389 4805654 ~ 4866411 (+) True LOC113547214
XM_034303594.1 mRNA upstream 90547 4774186 ~ 4789253 (+) True LOC113547242
XM_026947552.2 mRNA upstream 133498 4739570 ~ 4746302 (+) True mnx1
XM_026947464.2 mRNA upstream 326762 4532921 ~ 4553038 (+) False shrprbck1r
XM_026947463.2 mRNA upstream 326762 4532922 ~ 4553038 (+) False shrprbck1r
XM_026947564.2 mRNA downstream 2545 4896968 ~ 4913622 (+) True LOC113547295
XM_034303596.1 mRNA downstream 28228 4922651 ~ 4934918 (+) True LOC117597060
XM_034304068.1 mRNA downstream 52714 4947137 ~ 4956467 (+) True LOC113547245
XM_034303597.1 mRNA downstream 150705 5045128 ~ 5050075 (+) True LOC117597061
XM_026947512.2 mRNA downstream 257892 5152315 ~ 5159166 (+) False LOC113547260
TU70239 other upstream 171402 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 226679 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 326762 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 873459 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 1027233 3850423 ~ 3852567 (+) False LOC113545588
TU70376 other downstream 60712 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 79772 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 285139 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 685721 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 1244877 6139300 ~ 6139372 (+) True trnat-ugu_1

Expression Profile