RNA id: XM_034303940.1


Basic Information

Item Value
RNA id XM_034303940.1
length 3837
RNA type mRNA
GC content 0.41
exon number 15
gene id mylk4a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6518463 ~ 6560326 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGAAACGTGTCCTGAGGACAGGAAGAGGGTCACAGAACatgggagggaaagagaaaagggTCATGAGCATCTATAGTGTGGCCACTCATGaaagCTCACACAAGATGTGTTGTCGTGAGAATCTGGGGTTTGAGGTAACCCCAGTGCCGAAGACCAGCGCTCCAGAGTCATCATCTCCAAACAAGCAGGTCGGACTGAAGGGGGGATTCTTCCTCCACCTGGACAGAGTGGAGACCATGCGCTGCTTCTGGGAGCTCAAACTCACTGAGTTACAGGGGCATTTTCAACAGCTGAAGGAACACAAATTTAAAGATGGGAAGGAGAAGGGTCGCCTGAGCATTAAGGGGCTGAAGGcgcagaagaaaaagaagcccCCAGACACTACGGACTCTGTCTCCGTGAGGAAGCAGGCCTTGCTGCTGGAGGAAGTTCAGAAGCTTAACAGAGAGAATGCTGAGCGCTCGATATCATCCACAGCGTCAGAGGCTGAGGAGCCTCCCAGCCAAAACCTTCTGGATTTCATCCTGGATCAAGCCAAAGTTCCTGTGGTCGAACACGAGGAGCTTTTACCAGACAGCCAGGAGAGCAGCACTGATTtaaaagaagaggaggagaaagcgGAGGAGGAGAAAGCAGAAGCTATCCAGGATGAAGTGGATGAGGCGGTTAACAAATCCGAAGAGGAGATCAAAGAGGTGGTTGAGGAAGAGCGCAAAGAGGAAGATTCTGCCATGGTCGATGCTAAGGAGGCTGAGAACGCTGTGACACCACAGAGCTGTGAGCCAGAACCGCTGCACGAAGCCACGACGAGCAGCGAGCAGTGTGCGTCAGAAAAGGACCTTGAACTGCAGGCCTGTGAAAAAACCAGCGAAGAAGCCAATGAAAACCAAACGCCTGTTCCGGAAGATCTGTGTGGCGTTTTCAAAGCGGATGGAGTAGAAATCTGTTTAGATTTcagcaaaaacaagaaaaaggaagaggaaCAATTTGATGATGGAGAGTGCGAGCAGTTCTTCATCGACTGCACCCCTCCACCCCCAGCTCCCTTCATCCACCGTGTGGTTTCGGCCAAACCCAACCACATCAGCAACTTCTACACCATCAACCACCAGGAGATCCTCGGAGGAGGCCGTTTTGGTCAGGTGCACAAATGTATCGAAAATTCCTCTGGACTCACTCTAGCAGCCAAGATCATTAAAGCACGGAGTCCAAAGGAAAAGGAGGTGGTGAAAAATGAGATTCAGGTCATGAACCAGTTGGACCATTCCAATCTGATCCAGCTCTACGCCGCCTACGAATCCAGGAACGACATCATCCTCGTCCTTGAATATGTGGATGGTGGTGAGCTCTTCGACAGGATTATCGATGAGAACTACACGCTGACTGAGCTGGACACGGTCATGTTCGTCAGACAGATCTGTGAGGGTCTGCGCCATATGCACAAAATGTACATCATCCATCTGGACCTGAAGcCTGAGAATATCCTGTGTGTTAGCAGACTGACGAACAAAGTCAAGATCATCGACTTTGGACTTGCAAGAAAATATAAACCCCGGGAGAAGTTACGAGTGAATTTTGGCACACCAGAGTTTCTTGCCCCGGAGGTGATCAACTATGACTTTGTATCTTTCAACACGGACATGTGGAGCCTCGGAGTCATCACCTACATGCTCCTGAGTGGTTTGTCTCCGTTCCTCGGTGATGATGATAACGAGACACTGAACAACATCCTGGCCGGCCAGTGGAACTTTGAGGAAAGCGCGTTCTTAGGCATTTCAGATGAGGCCAAGGACTTCATCTCAAAACTGCTTATCTACAATAGAAGttGGAGAATGGGTGCAGGTGAAGCTCTGAAGCATCCTTGGCTTTCAGACCCGTTGCTCCATCAACACCTGTACAAAAAGAAGAACATGTGTCAATCACGTAGAAATTCATGCGTTCCTCCCCCCGAGAGCTAATATCTGGCTTTGTTTCCACCAGCCGAGGCCATCTGGACCAAGCCTGCTGTGCTTTTAATTACTGGAAATTACTTGTAAAACTACCTACCTTATGCTGTTTGGGTCATTTGTTGCAGAATTTTGTGCCATTCTGGTGACTGCAGTCACATATCATTATGGTTAATATCATTATCCTTTAGTTAATAAAGTGCATAGTTAAATAGGGTAGAGTCTCATAACCTAGTCTTCCCAAAACGCCATAAGAGTTTAAAGGGATtatttggaatattttattAGTTACAGTAATCAGagataataatcataattattgGGATTTCTTGGCTTTTTATGGATCTTTTTCTCCACTTTCTGAATATGTAAAAAGCTTTTAGAGTACCACTGTACAATGAAGAAGTACATAATAAAAGActtggaatgtgctgttataggaaaatagccACCGAtttggtggtgtgatgaagtggtgtAAGTGGTAACACCCTgaagcaatttaccaacaactatctgttaattaatgaatgacaaaatggcacagcagtatttttttaatctatttatagttacatttaacattgtggaaaaCCCACAAAACCACTTAACTGCTCCTTCACCAGACATCATTCTGTGTGACATTTCTCTTGAAAGtaatcaaacaaaacacacagcttgtcacgttctcaagaaaatgaaagtatcctgaagactttcctgttttggaaaatgtaaagttacaaagaaactgttacaaagctctgacactggagactccttccaacagCGTTAAGTAAACGTTTTCTTAAAGATAACTTAATCATCTCAgcgattatatgtttttctgttgttaagtaacaagacatttttaatttgtttattcttGTACAATTcccaatgaatgaatgagttgttactatagaaacgataacttattagaacgagcgcattaatataaatctgtgatttgagaattcagcataGCTGTCGTAGAATAATGATAGCTAACATACTACTATAAAAATTAGcatgtatatagaaataaaagaattgtgACTGGAATTACCAGAGGGCATTTgaagtgtttcagtgtgtgttattgaattTTATGTTCATTGCTTAAGCATGGTGTTGCAAATTCAGACTtggaaacaataaaaaaaagcaaaaatatttttatatagtttatgtATGATGACGTATAATAGAGGTCTCGATTTATACCTAAAATTCAACATTAGATAATATTATTTTAGAGATGCATGATCTCTTGCAGTGTTtctgtacatatttttttttctgtaatagtGCAATATGACCCTTTTCTCGGTGTTACATTGTTTAAAGAAGTAGATATTCAAGCTTCTTGACTTACTGTACTGTAACGGCCAATTTAACCGACGACATTTCATTGTATAATCTCTTCAACTTTATATGACGATGCATTAAATCTGATGAGGTGTGATCATAACAGGAATAAACTAACAATctctgttcatgttttttttttaaaaaatgtccaaaCACTATTTAtattgcctttctttcttttttggatTATAATTGACAGTAGTGTTTGCTAATCTAAAAGAATTTCTATTATTTGTGGGAAGTGAGGAAGTGAGAAAACACCGGCGTTAATAACGGAGTAAATTGTCTGTGAGGTTGAAGATTGAGCTGCACATCTTCTGTTCAGCTGCATTCTGTGCActttatgactttatttatttatttttacaacttTACAAAATTAACAGCCAATACaattttacaggattttttttttatttttttaatgccacaAATCATGTAACTTTCCATATTGTATATGTGTGAATGGCGAACAGGAAACATTTTTACAGTTGCATTAAAGTAATAAGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71370 lncRNA downstream 123392 6394865 ~ 6395071 (-) True G60333
TU71365 lncRNA downstream 128386 6389703 ~ 6390077 (-) True G60328
TU71348 lncRNA downstream 138566 6379698 ~ 6379897 (-) True G60311
TU71204 lncRNA downstream 545850 5969895 ~ 5972613 (-) True G60181
TU71206 lncRNA downstream 545850 5969895 ~ 5972613 (-) False G60181
XR_004578003.1 lncRNA upstream 27217 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA upstream 27685 6588011 ~ 6602226 (-) True LOC113547257
TU71581 lncRNA upstream 81645 6641971 ~ 6642185 (-) True G60503
TU71799 lncRNA upstream 225001 6785327 ~ 6792952 (-) True G60672
TU71790 lncRNA upstream 318318 6878644 ~ 6881335 (-) True G60669
XM_026947470.2 mRNA downstream 532248 5972624 ~ 5986215 (-) True ripk1l
XM_026947543.2 mRNA downstream 551159 5956127 ~ 5967304 (-) True LOC113547282
XM_034303996.1 mRNA downstream 568783 5931330 ~ 5949680 (-) True LOC113547251
XM_034304148.1 mRNA downstream 600503 5904196 ~ 5917960 (-) True LOC113547287
XM_034304149.1 mRNA downstream 600503 5904333 ~ 5917960 (-) False LOC113547287
XM_026947504.2 mRNA upstream 42474 6602800 ~ 6612842 (-) True LOC113547256
XM_034304050.1 mRNA upstream 215653 6775979 ~ 6778040 (-) True LOC117597185
XM_034303606.1 mRNA upstream 218030 6778356 ~ 6779988 (-) True LOC117597065
XM_034303607.1 mRNA upstream 219669 6779995 ~ 6789815 (-) True LOC117597066
XM_034303608.1 mRNA upstream 234759 6795085 ~ 6798486 (-) True LOC117597067
trnae-cuc_12 other downstream 74648 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 337504 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 558918 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 588264 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1032666 5478542 ~ 5485797 (-) False cldn1
TU71817 other upstream 322143 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 2015180 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2422908 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2754523 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2777500 9337826 ~ 9338745 (-) True G61537

Expression Profile