RNA id: XM_034304065.1


Basic Information

Item Value
RNA id XM_034304065.1
length 3012
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113547304
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4992589 ~ 5017807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGGCGAAAGAAACACCAGTTTTCAAGCAAGACCAGAGCTGAGACTCCAGCTCCAGCATGTCGTGGAGGTGTAGTGTCCGAGGGTGTGGGAAACGCAATCAGGCCAAAGCTAAAGATGTTGTTATTCACCGTTTCCCTGAAAAAGACTTGGAGCTCTGCAGTAAATGGTTAGCGGCTATCGGGAAGGTTGTGAATAAAACGGAGAGGAAATACGCGTCTTTCCGAGTGTGCAGCCAGCACTTCAGACCTGACGACTATGAGAGGGATTTGAAGGCGGAATTATTGGGATGTCCACCAAAAAAGGTCTTAAAGAAAACAGCAATTCCGTCTATTTTCCAGACTAAACGAAAGCCAGGCAGAAGGCCCTCTCACACTCCAAAGAAAAGTCAACCTGAGGTGTCTTCTGGAAAAGAAAATGCACCTACTCCAGGCACGGCATGTTCTGAGGTGGAAGAGAGCTCATGGATTAATGCAGTCAAGAGCCTTCAGACTCCTCAAGGAGCTAATATTTTTAGGAGCAGTGAGGTGATTGTGAACACACAGTGTTTGCTGGAGCTCTTCCAGTTCTGCTGGCTTTGTCAGAAAGAGTGCTGTATTACCATTGAGGGCAACGAGAAGCTGTTTTCAGTCACGCAGGACTGCCAGAGTTGTGGCCACCACAGACACTGGAGGAGTCACCCACCTTCAGCCGAAGCTACACACACCTTTCATAAAGAGGCAGAACATGCACTGAAGCATGAAGATGATGAGGAGGTTGTGGTTCACATTGTGTCATCAGATAACGAGTGCAGTGAGCAGGTGTTTATTGAAAAGGATGGATCGTATTTATCTAGTAATGATGAAGAAGCAAGTTTGCAGGAAGaggaagtgaaaaagaaaagaaagaggaaggcTAAACGTAAACACAGTTCAGATGAGTGGGAGCCATGTTTAGATGCAGAGGCCACAGACTCTGATGTGTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAAACTTGTGGTGTGGTGTACACAATGTGGGACCGAGGCCTCGCTCTCCTGTTCTGTCCATCGACACAAAAAAGCGTTCTGCTGTGCTCAGTGCAGTGAAGGTGACGACATTAAAACACATACTTTTGAAACACTACGTATTCGGTTTGATGACGTCGGCAGTTTTCAGAAACATGCTGAACAGGAGCACGGAGCCAAACCATTCTATATACTGTGTCAGGATTGTGGCAAGTTTGTTATAGCAGATCCTGAATCCCGAGGTTTAAAAGAACATAAATGTGAACACAAGTCCAAATTTATCATCTGTCCAGAATGTGGGAAAAGATTCCTCACCAAGGTCGGACTAAAGTCGCACTACACTCAGCTCCATTCGGATTATGATCATCCGTGTAAATACTGTCTGAAGGTCTTCAAAACCAGGTCAATAAAACTGGAACATGAGCAGACTCATCCTAAAGAAAAACAACCATACAGCTGTTCAAAGTGTCCAAAAAGGTTTTCTAATATTTATAAACGCAACAGACATGTCCGGTCCCATGGAGGTCCACAAAaacatgtgtgtgatgtgtgtaagaAGAACTTTAAGGACATTTACAAGCTGAGGAGACATAAGCTCATCCACTCTGGAGAGCAGCCTTTCAAATGCCAAGTGTGTGAGCGTTCTTTCAACCAAATGGAAAACCTCACTTCCCACATGCGCATCCACACTGGAGAGAAACCTTTCATGTGTGAACAATGTGGAGAGTCATTCAGTCACAACGTCAGCCTGAAGAACCACAAGCAACGACACCATGACTCAGGAGGACGAAGTGATGAATGATTTAGAGCAGGCATTCCCAAAAACGCCGGGCCACTTGTTTCGCaaagagaaactcacaatcctcctcttttgtttcatttgtttgttttacaaattaatactAGAAATATCGCAGACAATTTTGTGcgctaatttttttaaatgttactgggagttatattcagacaagccacatttaaatgaataggGCACAtgttattttcctctttttactGTCCTGGCACACTGCACTAGcgtagttcagcaataaaaatagacaaatttctctgtccatctaccTCTGCTAAACTAGTGTTGTGTCTCAAAAGCACTCTAAATTTAGTAGTAAATAACTCTGACCTTatattcatatcatatatattatatattcatatatcctGACATGTCCACTAGTGAATGTTGCTTTTAAATCTTCtggatgtacataagatatggTTCTgtacacacattaaaaatactGTGTTGAGTATAACCAGACCCTTCTGCTTAGAGTCAGGCTGTATCACGCCACCCCACGTAGTTGTTTAcctttaacagcacaacacttccACTGGACTGGTAGGTCAGTCCAAGgaatattattttccttttttagtCACTTgtgttaaatactgtatatatatgttactGGTTTAAATGTGCAACGGTTCAAATTCATAATGAATGGTTCTTAAAGACCTATTTAGATACTTCGTATATTTACCATTGAGGATGTGGATATTTACTGCATACATAAGCTACTTTTTCAGGACTTCTCTTTGGTATGGCAAGCTTTTGAAGATCACCTCCAGCGGCCTTCTTTCCAGTCGTCATGCTCCTGTAGTCACACAACAGAAAGACACTCCATGTTAGTTATTCACCAAGTGGAAGTTTGAGATGTGCATGTTGGTCATTTTGCGGTTTAGGTTCTTGACAGACATAAtgatcattttcttttaaattcaaGCCTGCATTGACAAACCTGGCACCAGCACTCTTCTGCTGTTATTTGTATAATATAGactgtgctgtctctctctacatacTGTGCTCTCTCTCTACATACTGTGCTGTCTATCTCTCCAGactgtgctgtctctctctacatactgtgctgtctctctctccagactgtgctgtctctctctccagactGTTGTCTCTCTCTACATACTGTGCTGTCTTTCTCCAGACTGTGCTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70520 lncRNA downstream 34692 4957717 ~ 4957921 (-) True G59598
TU70512 lncRNA downstream 50496 4940739 ~ 4942117 (-) False LOC117597188
TU70504 lncRNA downstream 51955 4928360 ~ 4940658 (-) False LOC117597188
TU70478 lncRNA downstream 78162 4870160 ~ 4914451 (-) True G59559
TU70306 lncRNA downstream 234848 4757431 ~ 4757765 (-) True G59416
TU70536 lncRNA upstream 67276 5085083 ~ 5086357 (-) False LOC113547297
XR_004578090.1 lncRNA upstream 104329 5122136 ~ 5129619 (-) False LOC117597191
XR_004578091.1 lncRNA upstream 104329 5122136 ~ 5129619 (-) True LOC117597191
TU70733 lncRNA upstream 161938 5179745 ~ 5196452 (-) False G59777
TU70747 lncRNA upstream 174353 5192160 ~ 5220686 (-) True G59788
XM_034304063.1 mRNA downstream 10092 4974262 ~ 4982521 (-) False LOC113547301
XM_034304062.1 mRNA downstream 10330 4974262 ~ 4982283 (-) True LOC113547301
XM_034304064.1 mRNA downstream 13237 4974262 ~ 4979376 (-) False LOC113547301
XM_026947573.2 mRNA downstream 19521 4960991 ~ 4973092 (-) True LOC113547302
XM_034304066.1 mRNA downstream 47592 4935885 ~ 4945021 (-) True LOC117597188
XM_034304054.1 mRNA upstream 2300 5020107 ~ 5025400 (-) True LOC117597187
XM_026947566.2 mRNA upstream 65001 5082808 ~ 5085151 (-) True LOC113547297
XM_026947471.2 mRNA upstream 82608 5100415 ~ 5104126 (-) True LOC113547224
XM_026947505.2 mRNA upstream 111890 5129697 ~ 5150222 (-) True LOC113547258
XM_026947506.2 mRNA upstream 111891 5129698 ~ 5150222 (-) False LOC113547258
trnar-ucg_1 other downstream 182749 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 344733 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 736329 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 757374 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1072482 3895201 ~ 3920131 (-) False LOC117597092
TU70820 other upstream 460735 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 882442 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 882442 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1163080 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 1425937 6443744 ~ 6443815 (-) True trnae-cuc_12

Expression Profile