RNA id: XM_026947582.2


Basic Information

Item Value
RNA id XM_026947582.2
length 3132
RNA type mRNA
GC content 0.50
exon number 13
gene id nom1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4758649 ~ 4769871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGcggaagcagaaaaaaacaaagatggcTGCCTCCATCTTCCATGCGCGTGCTGTGTTTTGGTCTGAACGGcgcacttttctttttaatctgcagctaataaaactgtaaaataatttattttacgCGTTTATATATCCAGAACATAAATATGAAACCTAAATTCCAGCGAAAAGGAGGCGGAAGAGGGAAACAGTCCAGAGACAAGCTGCACAAATTCATGGTTTCTGTCCACAACTTTGTCCAGAGTGAAGCAGGACATGATGAACTGGAGTCCCACGGCCACATGGAGATGCTCGCTAAAAGGAAAAGTCGAAAAGAAATGCGCAAAGAGAAGCGgaagctgaagaagaagaagaagatgaaggcAAAGCAGCCTGCAGAGGAGAGTAAACAGAGTGGCAGTGTGGATGCTGCTCCACAGAAAGCTCCACCAGCCATCAAACCCAGACCCCAGTCCAgctctgctcctgctcctgctcctgctgagCTCAGTGACAAGGAGAAGAAGCCGAAAAGAAAAGTGCATTTCGAGAAAACTTCTCCTCAGCCTGAGAAGAAAGCCAAAGTGCAGACCATGAGGAAGAAAGCTCTGATTGAAGCCAATGAGCTGGAGGACAGAGAGATCAAGAAGCTGGAGAAACGGCTTGGTCTCCATAAGAGGAGAAACAAGAAGAGCCTTCCGCAGTCCTTCATCAGCGACGGTCTCGATTACATCCTGGGCATTCTGGAGCCTGGAGGAGCTGCTTTATATGACAGCGATGAGGACGTGGATTCAGCCAAAGCGAAGAACAGGCTGGAGAAGTTAGAGGAGATcagtgaggatgaggaggatgaagatCACGATGAGTCAGAGCACACgggtgaggaggaggatgagatgaaggaagaagaggaggaggaggatgagatggaggaagaagatgaggaggaggaggatgaggagattGAAGGAGAtggggaggaggaagaagaaggagaagaaaaagaagaagaagaagaggaggaggaagagggagaagaaaatgaagaggACGAGGTAGAGGGAGAAGATGCATCAGAAGAAGAGGATGAGCAagatgatggagatgaagaAAATCCCCAAGACAAATCGTCTAGCAGTGAGCCGACAGGTAAATACGTCCCTCCTCATCTCCGTGACGCAGCCGACAGCAAGCGCAGAGCTGAGCTGGAGCGACTAAAACGCAGCCTGAAAGGTCTGATAAACAGGTTGAGTGAACCCAACATGGGCTCCATCAGCGGGCAGGTGGAGGAGATGTACATGAGCAACAGCAGGAAGGACATGAACGACGCGCTGACTGAAGTTCTGATGGCCGCCTGCGTTACGCCAGCGCTGATGCCTGACAGGCTGCTGATGGAGCACATTTTGTTAGTCAGTGTCCTGCATCACACAGTTGGACTGGAGgttGGTGCTCATGTCCTGGAGACGGTGGTGCGCCGCTTCGACGAGACCCAGCGCGACGGATCCATCACGGGTAAAGAGTGCTGTAATCTGGCCTCCATGATGGCGCACATGTACAACTTCCAGGTGGTGCACTCGCTGCTGCTGTTCGACGTGCTGAAGCGGCTGCTGGCGTCGTTCACGCCGCAGGACGTGGAGctcatgctgctgctgctgaggaacGTGGGCTTTTCCCTGAGGAAGGACGACCCTCTGGGCCTGAAGGAGCTGATATCTGAAACCCAGCGCAAAGCCAGCGCAGAGGGATCGCGTTTCAGCGACCAGACCAGAgtgcgGTTCATGTTAGAGACCATGCTGGCGCTGAAGAACAACGACATGCGGAAAATTCCAGGTTACGACCCCGAGCCTGTGGAGAGACTGAGGAAGCTGCAGCGCACGCTGATCCAGAACCGGGCAAGTGGCACTGATGTGAAGCTCAGGGTTTCTTTGGAGAATCTTCTGGAAGCGCAGCGCGTTGGTCGCTGGTGGATCGTCGGCTCGTCCTGGAGTGGAGCGCCCATGATTCAAGACGACAAACCCACAGCGCAGCCTGTTAAAGGGGAGCAGTTCAGTGCCAAAGTGCTGGAGCTGGCACGCAAACAGCGCATGAACACGGACATCAGGAGGAACATCTTCTGCGTCATTATGACCAGCGAGGATTACCTGGACGCCTTTGAGAAGCTCCTCAGACTGGGTCTGAAAGGTCAGCAGGAGCGTGATATCATTCACGTTCTGCTCGACTGCTGCCTGCAGGAGAAATCCTTCAACGGCTTCTACGCAGTTTTAGCAGAGAAGTTTTGTGCACATGACCGACGCTTCCAGATGACTTTCCAGTTCTGTCTGTGGGATAAGTTtaaagatctggcaaccctgtcgaGCAGTTCCTTTACAAACCTCGTCCAGATGGTCACGCACCTCTTAACCAAGAactccctctcactctccaTCCTGAAGgCCATAGAGTTTGGAGAACTCGATAAGCCCAAGGTAAGATTTTTGAGGCAGATCCTCTCTAAACTCTTACAGCAGACTCAGGAGGAGGATCTGGTTCAGATTTTCACCCGGATTTCTGGAATTCCTAAGCTAGGAATGCTACGTGAAGGACTGAAGCTCTTCATCAGGCACTTCCTGCTTCGGAGTGTGCAGACGGAGGGAACGCTGCTCACCGAGAGGGCCGAGGTCGCCATCAAGGCCATGGAGGCTCGCGACGCCAAGCTCAaactgtagcacacacacagtttctatCTGAGACTCGTGacaaaaatttttattaattgaacAGACTTCGTCCAGGAGGTGGCTCTTCAACCCAAATAATGAGGTCGATGTTTTCTAggactcactttttttttttcctttgcagtccattttaacatttttagtgGAAGGAGCACTCGATGTCCACGGCCACTTTAAACAAGGAGCCTCAGCTgtggaaagaagcaaaaaaaaacacctgttgGATTAACAACATCGAATATTCTTTATACTTTCATAATCTGTGAAGAACCTGGACTATAAAAACTTTCATTctcaaatatttcattattaataacaaagaaaaaggtGCGTGAGTGTCATGACAAAATGTCAAGACAGACTCGGAAAATGACTAATTCAGGTGTCAAGATAACCTtttcaataaaacatttaacagaTGCTTTATAAAAA

Function

GO: NA

KEGG:

id description
K17583 NOM1; nucleolar MIF4G domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70306 lncRNA downstream 884 4757431 ~ 4757765 (-) True G59416
TU70281 lncRNA downstream 79913 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA downstream 79913 4677165 ~ 4678736 (-) False G59398
TU70282 lncRNA downstream 79913 4677559 ~ 4678736 (-) False G59398
XR_004578075.1 lncRNA downstream 162120 4593407 ~ 4596529 (-) True LOC117597175
TU70478 lncRNA upstream 100289 4870160 ~ 4914451 (-) True G59559
TU70504 lncRNA upstream 158489 4928360 ~ 4940658 (-) False LOC117597188
TU70512 lncRNA upstream 170868 4940739 ~ 4942117 (-) False LOC117597188
TU70520 lncRNA upstream 187846 4957717 ~ 4957921 (-) True G59598
TU70536 lncRNA upstream 315212 5085083 ~ 5086357 (-) False LOC113547297
XM_034304061.1 mRNA downstream 29527 4678739 ~ 4729122 (-) False ube3c
XM_034304060.1 mRNA downstream 29527 4678739 ~ 4729122 (-) True ube3c
XM_026947532.2 mRNA downstream 86464 4663140 ~ 4672185 (-) True LOC113547274
XM_026947528.2 mRNA downstream 98269 4650694 ~ 4660380 (-) False LOC113547271
XM_026947527.2 mRNA downstream 98269 4654545 ~ 4660380 (-) True LOC113547271
XM_026947580.2 mRNA upstream 96610 4866481 ~ 4878229 (-) True c8a
XM_034304066.1 mRNA upstream 166014 4935885 ~ 4945021 (-) True LOC117597188
XM_026947573.2 mRNA upstream 191120 4960991 ~ 4973092 (-) True LOC113547302
XM_034304063.1 mRNA upstream 204391 4974262 ~ 4982521 (-) False LOC113547301
XM_034304062.1 mRNA upstream 204391 4974262 ~ 4982283 (-) True LOC113547301
TU70276 other downstream 110769 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 502365 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 523410 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 838518 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 1034084 3710571 ~ 3724565 (-) True LOC117597100
trnar-ucg_1 other upstream 39921 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 708671 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1130378 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1130378 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1411016 6180887 ~ 6180959 (-) True trnak-cuu_3

Expression Profile