RNA id: XM_034303204.1



Basic Information


Item Value
RNA id XM_034303204.1
length 2132
RNA type mRNA
GC content 0.49
exon number 15
gene id abcf2b
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22259992 ~ 22268392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGAGCTCTGCAGCCATGCCCTCAGACCTTGCCAAGAAGAAGGCTGCCAAGAAGAAAGAGGCAGCCAAAGCTCGTCAGCGAGTCAAAAAACACGAGGAGGTCGAGCAGCCGGGGAAAATGGAGCTTCCAAATGGGGAGACAAATGGAGATGTTTCTGCCCTGGCTAAAGAGCTAGATGAGTTTGAGCTAAGGAAGATAGAGGCTCGGGCGGTTACAGGTGTCTTGGCATCGCACCCCAACAGTACAGACGTTCACATCAGCAGTCTTTCACTGACTTTCCATGGGCAGGAGCTGCTGAGCGACACAAGCCTGGAACTGAACTCAGGCAGACGCTACGGTCTCATTGGCCTCAATGGCACAGGTAAATCTATGCTCCTGTCTGCTATTGGCCATCGAGAGATTCCTATCCCAGAGCACATAGACATTTATCATCTGACACGTGAGATGGCTCCCAGTGAGAAGACAGCATTACATTGTGTGATGGAGGTGGATGAGGAGAGGATCCAGCTGGAGAAGGAGGCAGAAAGACTGGCCCATGAGGACTCAGAGTGCGAGAAGCTGATGGAGATCTATGAGCGCTTGGAAGAGCTGGATGCAGACAAAGCCGAGGTTCGAGCTTCACGCATTCTCTATGGTCTGGGCTTTACCCCAGCCATGCAGCAAAAAAAGCTCAAAGACTTCAGCGGCGGTTGGAGAATGCGTGTCTCGTTGGCAAGAGCGCTGTTCATTAAACCTTTCATGTTGTTACTGGATGAACCCACTAACCACCTTGACCTGGATGCCTGCGTGTGGCTGGAGGAGGAACTCAAATCgtttAAGCGAATTCTTGTACTCATCTCACACTCCCAAGACTTCCTGAATGGTGTTTGCACCAACATCATACATCTACACCACAGGAAGCTCAGATACTACACAGGCAATTACGACCAATACGTGAAGACCAGGGAGGAGCTTGAGGAGAACCAGATGAAACGCTACAACTGGGAGCAGGACCAGATAGCACACATGAAGAACTATATTGCTCGATTTGGTCACGGCTCGGCTAAGCTGGCTCGTCAGGCTCAGAGCAAAGAGAAGACGTTGCAGAAGATGGTGGCCTCAGGCCTGACCTCCCGCGTAGTTACAGATAAGactctgtcattttattttcctcccTGTGGGAAGATTCCGCCTCCTGTCATCATGGTGCAGAATGTCAGTTTCAGATATTCCGACGACACAccatatatttataaaaacctGGAGTTTGGCATTGATCTGGACACGCGAGTGGCTCTGGTGGGCCCTAATGGAGCAGGGAAGTCCACACTACTGAAACTGCTGATGGGAGAGCTCCTCCCAACTGATGGTATGATCAGGAAACACTCACATGTGAAGATTGGCAGGTATCACCAGCATCTGACTGAACAGCTGGAGTTGGACCTGTCTCCTCTAGAGTACATGATGAAGTGTTACCCAGAGatcaaagaaaaagaggagatgAGAAAGATCATCGGACGGTACGGCCTGACGGGTAaacagcagGTGAGTCCCATCAGGAATCTGTCAGATGGTCAGAAGTGTCGTGTGTGCTTCGCTTGGCTGGCCTGGCAGAACCCCCACATGCTCTTCCTGGATGAACCTACCAATCACCTGGACATCGAGACCATCGATGCACTGGCTGAAGCCGTCAACGAGTTTGAGGGAGGGATGATGCTGGTCAGCCACGACTTCAGACTCATCCAGCAGGTGGCTCAGGAAATTTGGGTGTGTGAGAATCAGACCATCACCAAATGGAACGGAGACATTCTGGCGTACAAGGAGCACTTGAAATCAAAAATTGATAAACAGACACACGACGTTTGAAGATCTAGAGCCGGGACTCTTTCCTTTGCATCATGGATAGATTACTTTGCCCTGCTCATCATACTGTAATGCATGTGATCTAAGAACATTTCCCACAGACTTTCCCCAAAATTTCAGAGTGGATTGTTACTCGCATTCCAGTGTTCCAGCATcaaaatacagtacatgcatTCTCTATTCTTTGGAGagaacttcacacacaccaatcatAGTCTGGGTATCAACTgtcacttttctttttatttaatattataaatgcaATAATGTTGAATAAATCAAAGTTTACCA

Function


GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06185 ABCF2; ATP-binding cassette, subfamily F, member 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81775 lncRNA upstream 15167 22244588 ~ 22244825 (+) True G68947
TU81502 lncRNA upstream 342216 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 497710 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 497763 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 510673 21732946 ~ 21749319 (+) True G68621
TU81789 lncRNA downstream 114702 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 124447 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 258936 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 381551 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 658418 22926810 ~ 22938741 (+) True LOC113540593
XM_026936559.2 mRNA upstream 20368 22190686 ~ 22239624 (+) False smarcd3b
XM_026936557.2 mRNA upstream 20368 22209820 ~ 22239624 (+) True smarcd3b
XM_026936558.2 mRNA upstream 20368 22209820 ~ 22239624 (+) False smarcd3b
XM_034303733.1 mRNA upstream 20368 22209820 ~ 22239624 (+) False smarcd3b
XM_034303734.1 mRNA upstream 20368 22209820 ~ 22239624 (+) False smarcd3b
XM_034303791.1 mRNA downstream 4083 22272475 ~ 22317291 (+) True prkdc
XM_026936958.2 mRNA downstream 60876 22329268 ~ 22338376 (+) True ncf2
XM_034303842.1 mRNA downstream 95290 22363682 ~ 22364458 (+) True LOC117597114
XM_034303926.1 mRNA downstream 99338 22367730 ~ 22382067 (+) True kif9
XM_034303927.1 mRNA downstream 99338 22367730 ~ 22382067 (+) False kif9
XR_004578015.1 other upstream 497691 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1050112 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1840403 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2590634 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3439435 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3629743 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile