RNA id: XM_034303229.1


Basic Information

Item Value
RNA id XM_034303229.1
length 2105
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC117596971
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11467950 ~ 11582422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaagtgaaagtgaaaggcAGTTAGATCACACTGAGAAGAAAAacttattttcacattaatttCTGAAATTACCTGCAGGATATTCACTGACTCTGGGATATAAATGCAGACCATTCTCACTAACTGAAAAGAGGCAAGTGAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTCCATCACAAACAAAAGACAGAAGAAGGAAGAGCATGGATGAACCACATTCATtcCTAGTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCCGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAATCATGTTCCAAGACTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGACAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagagaaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA

Function

GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577942.1 lncRNA upstream 105522 11463083 ~ 11464606 (+) True LOC117596988
TU74234 lncRNA upstream 132273 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 148950 11418007 ~ 11421178 (+) True LOC113540368
XR_004577934.1 lncRNA upstream 244376 11322476 ~ 11325752 (+) True LOC117596981
TU74200 lncRNA upstream 244936 11322470 ~ 11325192 (+) False LOC117596981
TU74121 lncRNA downstream 8304 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA downstream 20026 11602448 ~ 11605230 (+) False LOC117596972
TU74255 lncRNA downstream 26334 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 28414 11610836 ~ 11611057 (+) True G62640
TU74260 lncRNA downstream 73045 11655467 ~ 11705262 (+) False si:ch211-200p22.4
XM_034303260.1 mRNA upstream 107381 11453930 ~ 11462747 (+) True LOC117596977
XM_034303244.1 mRNA upstream 124943 11440088 ~ 11445185 (+) True LOC113539902
XM_026936747.2 mRNA upstream 169522 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_026936804.2 mRNA upstream 311466 11255938 ~ 11258662 (+) True cideb
XM_026936802.2 mRNA upstream 325551 11240674 ~ 11244577 (+) True dhrs4
XM_034303238.1 mRNA downstream 8293 11590715 ~ 11600351 (+) True LOC117596972
XM_026936806.2 mRNA downstream 31346 11613768 ~ 11619677 (+) True vbp1
XM_026936969.2 mRNA downstream 49554 11631976 ~ 11637570 (+) True zgc:162171
XM_034304105.1 mRNA downstream 62479 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_034304104.1 mRNA downstream 62480 11644902 ~ 11705336 (+) False si:ch211-200p22.4
TU73719 other upstream 906721 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1004404 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1038600 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1039084 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1074658 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 62480 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 710092 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1835955 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1888347 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1976201 13558623 ~ 13562266 (+) True cited1

Expression Profile