RNA id: XM_034303239.1


Basic Information

Item Value
RNA id XM_034303239.1
length 2367
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113540344
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11509731 ~ 11519651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATAATAATCATGTTAATGTGTACACATATTGCTGTGTTATTCTGAAAGTCTGAGATCCACATACTGAAGCTAAAGCTGAAAGTGGGGACAAACTGCATTGTGATCATATGTGGATCTGCCCCTTTATCAGCCACTATGAAGTGAGCAAGGAAGTGACTAAAGTGCAGATGAAAAGCAGTTAGATCACACTGAGAAGAAAAacttattttcacattaatttCTGAAATTACCTGCAGGATATTCACTGACTCTGAGATATAAATGCAGACCATTCTCACTAACTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGGATCTTCATTACAAATGAAAGGCAGAAGAAGGAGCAGCAtggaaaaagacattttttTTGCTCGTAACTCCAGCAGTCTCCTGACTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTTACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGGTTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGACGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTCGATTGTTGTGCAGCTTTCTGTAAAACTCATTTAGAGCCACATAATAACATTCCAAAGCTCAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGATAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcgGTTCTGCACTGAAGGAGACCACAAGAATCACAACACTGTTCCTATAGaggcagagagcagagagaggaagACTCAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGACTGAAGAAGATCCAAGAAATCAAACACTCAGTAGAGCTCAGTAAAAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCAAATCCATATCTCATCCTGTCTGCTGATGGAAAACAAGTGACACATGGAGACGAGTGGAAGGATCTCCCTGATACACCACAGAGGTTTAATACAGGTGTTGGTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGTAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTTGTGAGAGAGTCCAGTAACAGGAAGGGGATGATTACACTGACTCCTCAGAATGGATTCTGGACTGTGGGACTGAGGAATGAGAATCAGTATGAGGCTTTTGCTGATCCCCCTGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATTCTTCAGTCCTAGGACAAATGAAGGAGGTAAAAATTCAGTACCACTGATCATCTCTCctgtatttaacactgaataATCATCTATTAAATGgtgagaataaaaagaaatattttacttttttggtgaattttagaaatacatatttccttttaaagtgctgtacagtttattttaatacctggggtttgtttttaattttaatcctacagtctgtttttacacattatgaTTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcGTTTACAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAAACTCAATCAAACACAAATGCAATCaaatt

Function

GO: NA

KEGG:

id description
K10651 TRIM21, SSA1; tripartite motif-containing protein 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74373 lncRNA downstream 38684 11441117 ~ 11471047 (-) True G62734
XR_004577935.1 lncRNA downstream 46693 11460070 ~ 11463038 (-) False LOC117596982
XR_004577936.1 lncRNA downstream 46693 11460070 ~ 11463038 (-) True LOC117596982
TU74413 lncRNA downstream 106710 11402269 ~ 11403021 (-) False si:dkey-183c6.7
TU74374 lncRNA downstream 143550 11365255 ~ 11366181 (-) True G62735
TU74459 lncRNA upstream 38659 11557584 ~ 11607947 (-) False G62813
TU74472 lncRNA upstream 52060 11570985 ~ 11605575 (-) True G62823
TU74456 lncRNA upstream 62646 11581571 ~ 11607947 (-) False G62813
TU74457 lncRNA upstream 80218 11599143 ~ 11607947 (-) True G62813
TU74482 lncRNA upstream 90623 11609548 ~ 11609774 (-) True G62830
XM_026936779.2 mRNA downstream 77479 11426298 ~ 11432252 (-) False syt4
XM_026936778.2 mRNA downstream 77479 11426298 ~ 11432252 (-) True syt4
XM_026936784.2 mRNA downstream 93834 11402027 ~ 11415897 (-) True si:dkey-183c6.7
XM_034303276.1 mRNA downstream 127812 11377829 ~ 11381919 (-) True ccdc166
XM_026933044.2 mRNA downstream 162143 11342706 ~ 11347588 (-) True LOC113538167
XM_034303833.1 mRNA upstream 5901 11524826 ~ 11535243 (-) True LOC117597110
XM_026937343.2 mRNA upstream 103960 11622885 ~ 11626845 (-) True rab39bb
XM_034303303.1 mRNA upstream 198420 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA upstream 198420 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303301.1 mRNA upstream 198420 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XR_003404120.1 other downstream 295309 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 296797 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 300898 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 327418 11177711 ~ 11182313 (-) False mrpl52
TU73964 other downstream 599732 10907127 ~ 10909999 (-) False nedd8
TU74378 other upstream 14839 11533764 ~ 11535013 (-) False LOC117597110
TU74889 other upstream 728349 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 753293 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 753447 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 753447 12272372 ~ 12277669 (-) False LOC113539775

Expression Profile