RNA id: XM_034303244.1


Basic Information

Item Value
RNA id XM_034303244.1
length 2651
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113539902
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11440088 ~ 11445185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGATACTCAGTCACTCTGACAGGACAGTGAACACAAAAAGTCTGACCCTTTAGAAAAAGACAGGCTGAAAGTAAAGattaagcAGGAAAGAGTGGGATGAAGGAAATGGCAGAATCAACATCGTCACAACCAAGAAAAAGCATTGCTCGTGACTCCAGCAGTCTCCTGCCTGAAAAGCAGCTGCTGTGTTGGATCTGTGAGGATGTGTTCACTGATCCAGTTACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTCATCTGAAGATTAATACAATACTGAAAGAGATGGCAAATTCCTTCAAGAAGAAAAGTGGTCATAACAAACCTGAGGTTCTTTGTAACGTCTGCACTAGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGAATTGTCGTACAAGTTTGTGTGAAACTCATTTAGAGGCTCATGATCATTTCCCAGGctttaaaaagcacaaacaaataaaccctgtggagaacctggaggactACACATGCCAGAAACATCATAAACCTCTGGAGCTGTTCTGTAGAGATGATCAGATATGTGTTTGTCAGTTCTGCAATGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAGGtggagagcagagagaggaagACTCGGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAAATCACACACTCAGTAAAGCTCAGCAAGAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggATCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGCCAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTCATACCACTTATCCCAATCTCATCCTCTCTGCTGATGGAAAACGAGTGACACTTGGAGACAAACGACAGAAACTCCCTGATACACCAGAAAGGTTCAATAAATGTCCTAATGTTCTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCAACAGAGTCCATTAACAGGAAAGGGAAGATTACACTGAAACCTCAAAATGGATTCTGGACTGTGGGGCTATGGAATGAGAATGAGTATAAAGCTTGTGCTGAAGTCCCTATCCCCCTTACAATGACAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGGGGAGGGTCTGGTCTCCTTTTATGATGTGAAGGCCAGCTCTTATATCTACTCTTTCACTGCTCAGTCTTTCACTGAAAAACTCTATCCATACTTCAGTCCTGGTTTAAATGAAGGAGGTAAAAATTCAGCACCACTGATCATCTCTCCTGTATTTAATAATTGAATATGTAGAGCCCTTTTcactaaaatgtataaatttctAAGAATGTGAAACAAAATTCAAACTGATACTCGCTAATAATGTGAACTGTTGCTTCTTGGTAGTTCATTTTAATTGTCTTATTCTAAAGTGTTTAAAGTGCTTATTTCTATTTAATACTTGCAGTTAGATGTGTTGAGATTAATCCAAATTGTGTATATTCCCCAAGGGGGAAAGTGTACTGTTTAACCTCTGGCTAAAAGATTGAGTTTTTCTCTGAAGACTGTCAGATGATTGGGTCGCAGATGTTCGGCGGGATGGAGGGCTGGGATTTGGACTACTTCACGTGATTCTTTGTAATCGTGTTTGAGTTCTTTGTGGATGGACATCAGGGACATTCAGATGTGTACTTCTTTTCCCCTTAAGATTATGAACATGGCTGTTCATCTCTTCACCTTACCAGGAGTTTGTGAGTATACATAAATTGTTGAATAGACATGAGCTCCAATGATGCGTGGCAATGAAGGACTTCCCAGCTGGgtgtttgttattgtttttttgttttctattctGTTCAAATTGAGGGGTTAAGTTGCTTGTTGAACTTGATTCAGTGCCCAAAACCTACAAGAggcaaaaagagagaaagaggagattCAAAGTTTAGTAAACAGCACTGATTTGTTCTAATttcacttttgtgtgtgttctcgGTGAGCAGAGATTGTTGACTTTACCTATTTTTGAATTATTGACTATTGTTTGATTGATACATGGATACTCTTGAAATAGTAAATTGAATAAATTGCAAATTTTTGAGTAATTGGTAAATTTTAGAAATACATATTCCCTTTTAAAATGCTGTGCAGTTTATTTTAGTACCTGGGGTTTGTTGTGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74234 lncRNA upstream 2233 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 18910 11418007 ~ 11421178 (+) True LOC113540368
TU74174 lncRNA upstream 73305 11275439 ~ 11366783 (+) True G62572
TU74196 lncRNA upstream 79573 11320097 ~ 11360515 (+) True G62585
XR_004577934.1 lncRNA upstream 114336 11322476 ~ 11325752 (+) True LOC117596981
XR_004577942.1 lncRNA downstream 17898 11463083 ~ 11464606 (+) True LOC117596988
TU74121 lncRNA downstream 145541 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA downstream 157263 11602448 ~ 11605230 (+) False LOC117596972
TU74255 lncRNA downstream 163571 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 165651 11610836 ~ 11611057 (+) True G62640
XM_026936747.2 mRNA upstream 39482 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_026936804.2 mRNA upstream 181426 11255938 ~ 11258662 (+) True cideb
XM_026936802.2 mRNA upstream 195511 11240674 ~ 11244577 (+) True dhrs4
XM_026936755.2 mRNA upstream 248094 11183735 ~ 11191994 (+) True ajuba
XM_026936767.2 mRNA upstream 268748 11159921 ~ 11171340 (+) True mmp14a
XM_034303260.1 mRNA downstream 8745 11453930 ~ 11462747 (+) True LOC117596977
XM_034303231.1 mRNA downstream 22765 11467950 ~ 11582422 (+) False LOC117596971
XM_034303232.1 mRNA downstream 104415 11549600 ~ 11582422 (+) False LOC117596971
XM_034303233.1 mRNA downstream 104466 11549651 ~ 11582422 (+) False LOC117596971
XM_034303229.1 mRNA downstream 124943 11570128 ~ 11582422 (+) True LOC117596971
TU73719 other upstream 776681 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 874364 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 908560 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 909044 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 944618 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 199717 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 847329 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1973192 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2025584 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2113438 13558623 ~ 13562266 (+) True cited1

Expression Profile