RNA id: XM_034303249.1


Basic Information

Item Value
RNA id XM_034303249.1
length 2076
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC113538503
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10167917 ~ 10189928 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACTATAAAAACAAGCCATTAAATCTCTCAATTAAATACCACAGCTGTGATTTGAGCTGGGGCGGAATTTAAATGTGTGGCGGGCTGTCATCTGTCTACacagtgtgtttaagtgtttgaAGGAACTATTCCACACAAACTGCACTGTAATCATTTTTGATCCACCCATAATCCTTAACTCAGTTCACTAGAAGTGAACAAGGAAGTGACTAAAGTGAAAGCAGTTAGCTCCCAGGGAGCAGAATCCCttctttttataataaatactgaACTTATATGTAACTGCAGGATATACACTGACTGTGAAAGGAATATAAATGCAGACCATTCTCACTTCCTGAAAAGAGGCAAGTAAAATAAAGgaattatgtttttgtgtgtgactCTCCTGATTCTCTTCAGCTTTATGGAATCTCAATCAGAGCATTTACAGGTGGTTGGTCCAGAAGCTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCCTGTTTTATCAAACCCAACACCAGCGCTGTGGACATGACAGTGGAGTGGTTCAGACTAGATGTAAAGGACTCATTAGTGCATCTCTATAAGGATCATGAAGACAGAAATGAATATCAGGCTCAGTCCTACAGAAGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGGAGGAGAATATAAGTGTCTTGTTGAGGACAAATCCTGGTCTGATGACATCATTGTGAACGTCATTGTCGAAGCTCAGGGAAGCCACCCAGTAATCATGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGTTGGAACCCTGAACCTGATGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGAAgctacacagatacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCAACTCCAACACGTTTTACTGCAGATTTCAACAAATTCATCACATGATGGAGGCAGAAGTTATCATTAATAGTAAAGTCTTCGATGCTTGGAAGTGGATTGTTGGCATTTCAGTTTCAGCATGTCTTATTGCTGTTGGATTGATAGCTGCAATAACTGCAATTATTTGTCACAAGAAAGagCTGCAGAGACAGAGCATGGAATATGagaggcagatacagagGCTGGGAGCCGAGatgcagaaagagaaggagtaCACAGaaCTGCAGAGACAGAGCGTGGAATATGAGTTAGTAAAGAAGAAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCAAATCCATATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACGAGTGGAAGGATCTCCCTGATACACCACAGAGgtttactttttattatagTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTCGTGAGAGAGAACATTGACAGGAAGAGGTGGATTACACCGAAACCTCAGACTGGATTCTGGACTGTGAGACTGTGGGGTGAGAATCAGTATAGTGCTAATGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAATCCTTGGTTAAATGATGGAGGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGCTGTACAGTTTATTTGAATACctggggtttgttttttttattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA

Function

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73517 lncRNA downstream 87700 10078927 ~ 10080217 (-) False LOC113540372
TU73473 lncRNA downstream 94724 10070406 ~ 10073193 (-) True cxcl19
XR_003404074.2 lncRNA downstream 126138 10041567 ~ 10041779 (-) True LOC113540700
XR_004578135.1 lncRNA downstream 127223 10040482 ~ 10040694 (-) True LOC117597227
XR_003404083.2 lncRNA downstream 128330 10039380 ~ 10039587 (-) True LOC113540709
XR_004577927.1 lncRNA upstream 12303 10202231 ~ 10211232 (-) True LOC113540369
TU73581 lncRNA upstream 174084 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 178393 10368321 ~ 10370563 (-) True G62109
TU73609 lncRNA upstream 284842 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 307593 10497521 ~ 10499087 (-) True LOC117596989
XM_034303827.1 mRNA downstream 24488 10111162 ~ 10143429 (-) True LOC117597105
XM_026936742.2 mRNA downstream 61388 10095779 ~ 10106529 (-) True LOC113540311
XM_026936816.2 mRNA downstream 72801 10093747 ~ 10095116 (-) True LOC113540363
XM_034303281.1 mRNA downstream 87680 10078688 ~ 10080237 (-) True LOC113540372
XM_026936815.2 mRNA downstream 94688 10070816 ~ 10073229 (-) False cxcl19
XM_034303829.1 mRNA upstream 41746 10231674 ~ 10236612 (-) True LOC113547269
XM_034303275.1 mRNA upstream 118723 10308651 ~ 10320200 (-) True LOC117596978
XM_026936775.2 mRNA upstream 143541 10333469 ~ 10344131 (-) False LOC113540334
XM_034303264.1 mRNA upstream 143541 10333469 ~ 10344131 (-) True LOC113540334
XM_026936750.2 mRNA upstream 156352 10346280 ~ 10359403 (-) True f13a1b
TU73337 other downstream 130342 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 362599 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 639114 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 829172 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 840486 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 284468 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 285695 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 286930 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 289371 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 290589 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile