RNA id: XM_034303254.1


Basic Information

Item Value
RNA id XM_034303254.1
length 1631
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC113539896
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11090981 ~ 11111094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTGGGGCTGCAGCAGTGCAGATGGATGAATCTGGAAAAAGGGCGTTTAGTTTCACATTTAAGTAACGGGTTCCACAAAAAGCACAACGAACTGAAACCGTGGATTTTGGGACACAGGGGTTTCTTTAGCGTCTTCTTACTGAGCAAATATAAACCTTGAAGTGAggatgtttttatttgtgactCTCCTGATCCTCTTCAGCTTTATGGAATCTCAATCAGAGCATTTAAACCTGGTTGGTCCAGAAGCTCCTCTTGTTGCTGTAGCTGGTGAAGACCTGGTTCTGCCCTGTTTTATCAGACCCAACACTAGCGCTGTGGACATGACAGTGGAGTGGTTCAGACTATATGTAGACGACTCATTAGTTCATCTCTATAAGGATCATGAAGACAGAAATGAAAAGCAGGCTCAGTCGTACAGAGGAAGAACTTCAGTTTTCAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTCTTGTTGATGACAAATCCTGGTCCGATGACATCACTGTTCACATCACTGTGGAGGTCCTGGGAAGCCACCCGGTGATCACGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTACTGTGTGAGTCCAGAGGCTGGAAACCTGAACCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGAagctacacagacacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCGACTCCAACAGGTTTTACTGCAGACTTCAGCAAAAACATCACATGATGGAGACAGAGGTTATCATTAATCGTAAAGTCTTTGATACTTGGAAGTGGGCTGTTGGCATTTCAGTTTCAGCATGTCTTATTGCTGTCGGATTGATAGTAACTGCAGTTGTCTGTTACAAGAAAgAGCTTCGACAGGTGAAACAAAATGCAGagcAGCAGAGACAGAGGAGGGAAGATGGGCAGCAGAAACTGAGGGTGGCAGTTGAGcttaaaaagaggaagaagctGTTTGCAGTGGATGTGACTCTGGATCCTGATACAGCTAATCCTGCACTCATCCTGTCTGATGATGGAAAACAAGTGACACTTGGAGACACACAAAAGAATCTCCCTGATACACCACTGAGGTTTAAATTTGCCAGTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGCGGGAAAACTGAGTGGACATTAGGAGTCGTGAGAGAGGACATTAACAGGAAGAGGTGGATTCCACGGAGTCCTCAGAATGGTTTCTGGACTGTGGGCCTGAGGAATGAGAATCAGTACTGGGCTTATGCTGAtgctgctgtctctctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTAAGAAGAAACTCTATCCATACTTCAGTCCTCGATACAATGAAAGAGGTGAAAATTCAGcaccactgatcatcactgCTGTTACTGAATAAATATCTGTTTTATATTCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577928.1 lncRNA upstream 68185 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA upstream 68185 11020139 ~ 11022796 (+) False LOC113540371
TU73963 lncRNA upstream 180839 10907025 ~ 10910142 (+) True G62416
TU73906 lncRNA upstream 226120 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 274429 10815750 ~ 10816552 (+) True LOC117596985
TU74139 lncRNA downstream 65935 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA downstream 71676 11182770 ~ 11183734 (+) True LOC117596983
TU74145 lncRNA downstream 104061 11215155 ~ 11215743 (+) True G62554
TU74174 lncRNA downstream 164345 11275439 ~ 11366783 (+) True G62572
TU74196 lncRNA downstream 209003 11320097 ~ 11360515 (+) True G62585
XM_034303247.1 mRNA upstream 27453 10989215 ~ 11063528 (+) True LOC113540335
XM_026936774.2 mRNA upstream 75648 10998592 ~ 11015333 (+) False LOC113540335
XM_034303252.1 mRNA upstream 102415 10964062 ~ 10988566 (+) True LOC117596976
XM_034303248.1 mRNA upstream 128422 10944179 ~ 10962559 (+) True LOC117596975
XM_034303255.1 mRNA upstream 151510 10918503 ~ 10939471 (+) True LOC113539892
XM_026936763.2 mRNA downstream 19081 11130175 ~ 11137426 (+) True LOC113540324
XM_026936767.2 mRNA downstream 48827 11159921 ~ 11171340 (+) True mmp14a
XM_026936755.2 mRNA downstream 72641 11183735 ~ 11191994 (+) True ajuba
XM_026936802.2 mRNA downstream 129580 11240674 ~ 11244577 (+) True dhrs4
XM_026936804.2 mRNA downstream 144844 11255938 ~ 11258662 (+) True cideb
TU73719 other upstream 427574 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 525257 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 559453 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 559937 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 595511 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 533808 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1181420 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2307283 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2359675 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2447529 13558623 ~ 13562266 (+) True cited1

Expression Profile