RNA id: XM_034303255.1


Basic Information

Item Value
RNA id XM_034303255.1
length 1913
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC113539892
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10918503 ~ 10939471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAAAACGAAAGTAAGATACAACCAACTGAAAGTGTGAGCTGTGAGACGAAAGGTCTTTATTTTCAGCATATTCTTATtgagaaaatataaacattaaaaatgaggatgtttttatttgtgactCTCCTGATCCTCTACAGCTTTATGGAATCTCAGTCAGAGCGattacaggtgGTTGGTCCAGAAGCTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCCTGTTTTATCAAACCCAGCACCAGCGCTGTGGACATGACAGTGGAGTGGATGAGACTAGATGAAGTGGCTTCATTAGTGCATCTCTATGAGGATCATGAAGACAGAAATGTAAATCAGGCTCAGCCCTACAAAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTGCGAGTCTCTGATGAAGGAAAATATAAGTGTCTCGTTGAGGACAAGTCCTGGTatgatgacatcactgttcACATCACTGTTGAGGCTCAGGGAAGCCACCCAGTGATCACGATGGAGAGTTATGGTAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAACCCTGAACCTGAGGTCCTGTGGATGGACAGAGAAGGAGCCACTCTGCCTGCTGaagatacacagacacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCGACTCCAACAGGTTTTACTGCAGACTTCTacaaaaacatcacatgatGGAGGCAGAGGTTATCATTAATAGTAAAGTCTTTGGTGTTTGGAAGAGGGTTGTCGGCATTTCAGTTTCAGCATGTCTTACTGCTGTCGGATTGATAGTAACTGCGGTTATCTGTTACAACAAAGCCTCAGAGCTTCAGAAGGAGAAGAGATATGCAGagctgcagagacagagagtggaAGATGAGTTTATAAAGAAGAAGATGTTTGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACACACGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGtttacttcttcttcttgtgtTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTCGTGAGAGAGAACATTAACAGGAAGGAGTGGATTACACTGACTCCTCAGGATGGAGTCTGGACTGTGAGACTGAGGAATGAGAATCAGTACAGGGCTTGTGCTGGTCCCCGTGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATTCTTCAGTCCTAGGACAAATGAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTGTTAAATGgtgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacttggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagataaTTTACAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAGActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaaaatg

Function

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73963 lncRNA upstream 8361 10907025 ~ 10910142 (+) True G62416
TU73906 lncRNA upstream 53642 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 101951 10815750 ~ 10816552 (+) True LOC117596985
TU73717 lncRNA upstream 255096 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577940.1 lncRNA upstream 412026 10499275 ~ 10506477 (+) True LOC117596986
XR_004577928.1 lncRNA downstream 80662 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA downstream 80668 11020139 ~ 11022796 (+) False LOC113540371
TU74139 lncRNA downstream 237558 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA downstream 243299 11182770 ~ 11183734 (+) True LOC117596983
TU74145 lncRNA downstream 275684 11215155 ~ 11215743 (+) True G62554
XM_034303268.1 mRNA upstream 953 10910916 ~ 10917550 (+) True gmpr2
XM_026936772.2 mRNA upstream 12945 10885506 ~ 10905558 (+) True slc7a8a
XM_026936814.2 mRNA upstream 143267 10771447 ~ 10775236 (+) True txn
XM_026936788.2 mRNA upstream 148294 10763576 ~ 10770209 (+) True si:dkey-11k2.7
XM_034303269.1 mRNA upstream 148415 10763575 ~ 10770088 (+) False si:dkey-11k2.7
XM_034303248.1 mRNA downstream 4708 10944179 ~ 10962559 (+) True LOC117596975
XM_034303252.1 mRNA downstream 24591 10964062 ~ 10988566 (+) True LOC117596976
XM_034303247.1 mRNA downstream 49744 10989215 ~ 11063528 (+) True LOC113540335
XM_026936774.2 mRNA downstream 59121 10998592 ~ 11015333 (+) False LOC113540335
XM_034303254.1 mRNA downstream 151510 11090981 ~ 11111094 (+) True LOC113539896
TU73719 other upstream 255096 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 352779 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 386975 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 387459 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 423033 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 705431 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1353043 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2478906 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2531298 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2619152 13558623 ~ 13562266 (+) True cited1

Expression Profile