RNA id: XM_034303279.1


Basic Information

Item Value
RNA id XM_034303279.1
length 1653
RNA type mRNA
GC content 0.45
exon number 4
gene id msmp
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10569552 ~ 10574841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAATGaacgtcatcatcatcatcatcatcatcaaacatcattatcatcatcattgtaATTATTATGTGCTTTCTAGCCTTCCATTGAATGACCAAGCCAAGCCATTAAAACCAGCAAAGAACCACAGTGTTCTTTCATTTAAGTCATGTTTAAGCCTTTCATTTAAGCCTGGTTTCAGCCTCACTGGTGATCAAAACACAACTGTGGAACTTCTCTTCTCTGTGGCTTGGCCAGCAGTTATGTACATAAAATGGTGAATGAGTCAGTCTTCATACCAGCCCAACACCTCAGTCCATTACATGCTCCACTCAGTGTTAAAGAGCTGTTTAAGAGGACAAGCGCCATTGCTCTCCCACTGTGTgctccacacactcacagcagagGCTATGTCCTTTCTCCTTTACGCAAACCCACATTCCTGGGCTTTTATACTGAGGGGAAGTGGGTGGTCAAGCTTTCCAGCCACTGGACAAGACACAAAAACTACAGGGTCAAGCCAAGGTGTGTGTCATGCCCAGTGGAGCAGAGAATGGCAAATCGCTGGAGAAACAGATCGAATGGTGCCAAGCCACAGCCTTTTTCCTCTCcaacccccccaaaaaacacGCCAATGGTTCCCCCTCCCACCTCTGCTGCACCTCGAGCTCACATAAGTGTGGGGGGGTATAAATGGAGTTACAGAAACAGAGAGTGATTCAGACAACaagtgacagaaagagaagagatGGCAGGACAGTGGATGATGATCTTGATTGGTGTTTCACTGGGGATGACCTGCTTGGCAGCTCCAACCGAATGCCACTTCAACTCTCAAGctctgtgtgagTATGAGGGAAGGCACTACTCATTGGGTCAGAGCTGGATGGAACAGGGGTGCATACAGTGCACCTGTCTGCACCCTTTTGGGGTGGGCTGTTGTGAAACTGTGGAGCAGCCAGTGGACTTCCCACCTTGGTGCCAGGTGCGAGTTGAATCTGTAACCTGCAAGGTGAGCTTGGTGCTGACCTCTGACCCACGTCTGCCCTGCCTTCCGGGAGAGGGGAACAGTGTGGACCCCAGTCATGGAGAAATGAACATGAAACTAGCAGGTTAACAAGACAACAAAGCAGTTGATCCATCTGCCAAACCTGCATCATGCCTGTCTGCCTAAGCTGTCATTGTGCTTCATCTGTACGATCTGTAATAATGATACAAGTAACTAATATTTGCTTTTTATCACCCTGAAAGTTAGACAAAGTGGTTGGTCATGTGCTGCTCTTGTCCAGGGGTCATTTCTGTCCCCTGCTTTAATAAACCGTACTGGTTTTATATCTTGCCTGACTATGCAGTGATGAAAGAACCCTCCAGAGCACAGATTTGGTAATAATTGCAAAAGACTTCTAGTCTAGGTACAGGTGATTCACCTATAGTATTCACTATGAAGTTGAAACACAAATACTAATCCTCAATCAGCACTTATAGCCTGGAAAGGACACATGCTGTTTTGGAGTGGTACTTCCTCATCCTTCATTACATTGATTTAATTCATACATCTACTCAAATAGCATGGTCATGATATGTTAATATTACCTAATGCACTATTGTAAATACCCAGCTTTGCGCCTTCAATGatatacatattacagttttatttcatgtgTACCACTTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73657 lncRNA downstream 30963 10538298 ~ 10538589 (-) False gba2
TU73654 lncRNA downstream 35130 10534073 ~ 10534422 (-) True G62167
XR_004577943.1 lncRNA downstream 70465 10497521 ~ 10499087 (-) True LOC117596989
TU73609 lncRNA downstream 85624 10474770 ~ 10483928 (-) True G62125
TU73582 lncRNA downstream 198989 10368321 ~ 10370563 (-) True G62109
TU74041 lncRNA upstream 353048 10926840 ~ 10953744 (-) True G62469
TU74080 lncRNA upstream 468553 11042345 ~ 11074703 (-) True G62504
XR_004577933.1 lncRNA upstream 506739 11080531 ~ 11083012 (-) True LOC117596980
TU74367 lncRNA upstream 698408 11272200 ~ 11360044 (-) False LOC113540328
TU74365 lncRNA upstream 737781 11311573 ~ 11313616 (-) False LOC113538166
XM_026936746.2 mRNA downstream 7546 10538245 ~ 10562006 (-) True gba2
XM_034303277.1 mRNA downstream 95554 10460219 ~ 10473998 (-) False c4h20orf27
XM_026936780.2 mRNA upstream 21901 10595693 ~ 10601685 (-) False si:dkeyp-75h12.7
XM_034303263.1 mRNA upstream 21901 10595693 ~ 10601629 (-) True si:dkeyp-75h12.7
XM_034303222.1 mRNA upstream 28045 10601837 ~ 10631020 (-) False tesk1
XM_034303223.1 mRNA upstream 28045 10601837 ~ 10631020 (-) True tesk1
XM_026936769.2 mRNA upstream 72859 10646651 ~ 10658141 (-) False nelfa
trnan-guu_12 other downstream 74314 10495165 ~ 10495238 (-) True trnan-guu_12
trnan-guu_11 other downstream 77889 10491590 ~ 10491663 (-) True trnan-guu_11
trnan-guu_10 other downstream 79131 10490348 ~ 10490421 (-) True trnan-guu_10
trnan-guu_9 other downstream 82811 10486668 ~ 10486741 (-) True trnan-guu_9
trnan-guu_8 other downstream 84040 10485439 ~ 10485512 (-) True trnan-guu_8
XR_004577925.1 other upstream 120337 10694129 ~ 10747646 (-) False poln
XR_004577926.1 other upstream 132218 10706010 ~ 10747646 (-) False poln
XR_004577924.1 other upstream 202968 10776760 ~ 10863498 (-) False svep1
XR_004577923.1 other upstream 207430 10781222 ~ 10863498 (-) False svep1
TU73964 other upstream 333335 10907127 ~ 10909999 (-) False nedd8

Expression Profile