RNA id: XM_034303285.1


Basic Information

Item Value
RNA id XM_034303285.1
length 3927
RNA type mRNA
GC content 0.42
exon number 17
gene id lmbr1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28574908 ~ 28605243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatttaCCGGAATGCGGTGGGAAAGTAATAACGCCTCTTTGGATGCGCGCAGTGTTTGGTCGGTTGCTAGCTAATCTTTGTTTGAAGCTAGTTCGCGGCAGTATTGGGAAGTCTATGAGCTAAGTGATGTGCATGTGCAATATGAAGAATGGAAGAAGACGATGTCACGATCAGAGAGCAGAATTTCCACAGCCAAGTCCGAGAGTACATTaTCTGTTTCCTGTTGTTTGCTGTGCTGTACATCGTGTCCTACTGCATCATAACTCGCTACAAGAGGAAGAGTGATGACCATGAAGATGAAGATGCAGTCGTTAACAGAATATCtatgtACCTGTGTACGTTCACTCTGGCCGTATCCGGAGGCGCTGTCCTCCTCCTCCCGTTCTCTATAATCAGTAACGAGATCCTTCTGTCGCTCCCCAAGAACTACTACATCCAGTGGCTCAATGGCTCGCTCATCCACGGTCTGTGGAACCTCGTCTCGCTCTTCTCCAACCTGTGTCTCTTCGTCCTCATGCCTTTCGCCTATTTCTTCCTGGAGTCCGAGGGATTCGCCGGCTCTAAAAAGggccTGAAAGCTCGTATCCTGGAGACGTTTGTGATGCTGTTTCTGCTCGCTCTGCTCATCCTGGGCATCGTGTGGGTCGCGTCAGCACTCGTCGACAACGACGCTGCCAGCATGGAGTCTCTCTACgacctGTGGGAGTTCTACCTGCCCTACTTGTACTCGTGTATCTCTTTGATGGGCGGCTTGCTGCTTCTGAtGTGTACTCCAGTGGGTTTGTCCCGCATGTTCACCGTCATGGGCCAGTTGCTAGTCAAACCCACGATTTTGGAGGATTTAGACGAACAGTTGTACTGCATTCAGCTCCAGGAAGAAGCTTTACAGCACAGACTCAATGGTTCAGGCTCCTTTTTACTCGCCACCTCCCAGAATCTCCACAAAGAACTGGAGAGTATACGCTCGCAGAGACACAAGCTGGagaggaggaagaaagcATCAGTTTGGGAGAAGAACCTTCTCTACCCCTTCGTCATGTTAATACTGCTCGCTGGCACgGCGATCTCTGTGTGTTTGGTGGCTCTGAACATTTTGTACCTGCTGGTGGATGAAACTGCGCTACCGAAGGGATCAGCAgatcCCGATATTGGGAATGCATCTCTTTCTACGTTTGGCGTAGTGCAGGCTGTGGTTGAAATCGTCCTCATGATTTACCTGATGGTCTCCTCTGTTGTGGGATTCTACAGTCTTCGCATCTTTCAGGGACTCACGCCCAGGAAGGACGACACCACCATGACCACcATCATCGGTTGCTGTGTGTCCATCCTGGTCTTGAGCTCTGCGCTCCCCGTCATGTCCCGAACTCTTGgaataACGAGGTTCGACTTGTTGGGGGATTTCGGTCGGTTTAACTGGTTGGGGAATTTCTACATTGTGTTGTCGTATAACCTGCTGTTTGCTGTGGTGACCACGCTGTGTTTAATCACCAAGTTCACCTCCGCTGTCCGAGAGGAGCTGCTCAAAGCCCtcgGTCTGGATAAACTGAATCTGTCCACCAGTCCAACGGAACCTGAATCAAATAAGCTAGCGGCGAACGGCCATCAGAAGACGCTCTGAACTCCTCTCTCAATCACACAGTAAAATAGGGTATGGCTGGAGATTTGAAGACGCCTTATtaccacctaaacacacactgtcccaTCAGACGGGTGCGTCCCCTGCAGCAGGACGTTTACAGTGCAGACTTTCATTAAGCCGCTTTATTTAAGCTCCCACCTTCACTTTTCCCCTTCTTTTCCTTTCGTCTTTTCTGTTttcgcgcgcacacacgcgccaTTAGAAGTTTGCGCAttttaatgcagttttaaattctatttttttcccttcttcatGCTGTGAATAAGCGGACTCGGGTAAAAGTGAAAGCATAATCGTCATGTAAATGTTGTATTTGTCTGTATATATTCTTTTGTCATTGTGTAATCTTTtgtacagtgtttttttgtttgttttgtttgttcatgtcCGGAAATTCACCTCTGATGCCTTACGAAACAGGGGAGGATTTTACAGGCGCTTTAATAGTCGTCACATgcagtgagtatgtgtgtgttagacatgTGCCGATGTGTGTGGTGCCCCTGCTGACCCCCTCGACTCTGCTGTCATAGATATCGCTCTATTGGCTGAAGTCGCTCACATGGTGCGTGTGTAACAGTGCTGTTAAATAGAGCTAGCAAGTGTTGCACCAGGGAGTTAGCAGTCGAGTTGCTAAACAATAGCTCACTATCCTGCTAGCTGTTTATCCAGAGGTAAAGACAATGCTAACAAGAAAAGCTGAGCAGTAAGGTGTTCATTCAGTTTGCTAAATCAAATACCATGTTGATTCATAAGAACATGAAGCTGGTATTTTATTTACCAGATTGAATGAACTATTTACTATTTGATTCATTAGAACAAGTTTTGATGTAGTTTGGTAAATCAAGTACAAATGTGGTGTCTGGTTCTGGTGAATCAAATACCAGTGTCATGATTTTCTATTTGATTTATTAGAACAAATCATCAGACTGGTATTTGATGCACCAGGACCAAATGGAATGAACTCTTTCTCTTTGAATCATTAGAACAGGTGATCTGGTAAATCAAGTACCAACGTGTTGTCATGATTTTCCTATTTGATTCATGGCATTTAATTCACCAAAACCAATCAACACTGTACTGTTTGACTCATTAGAACAAGTGTTGACTGGGTCTGGTGAATCGATTCTGATGTTTCAGCAGGAACAAATGAACACAGCACTGCTTGATTTACCAAATCGAATTAACTCTTGATTTGTTCTAATGAATCAAAAATTAAACACGGGTATCTGATTCACAAGAACCAAAGTGACATATTGATACTTGATTTACCAAACCGAATTAACTCTTTACTATTTGATTCATTACAAGAAGTGATGATTCAATTTGGTGAATTTGTTAACTGGTTCTGGTGAATCAAATACCAGTGTCATATTTTACGATTTAATTAGAACATGTTTTCAGACTGGTATTTGATTCAGCAGAACTAAATGAACACATTGGTACTCGATTTACCAAACTGAATCAACACATTACTATTTGATTCATTAGAATTGGTGTTGATTCAGTTTGGTTAATTAAGTACCAGTGTATTGAATCAAATAGCAGAGTCATGATGTTCTAAGTAAATCCAATGAGTTTATTGGTGCTGATGAATCAAATCCCAGTCTGATGGTTTGTTCTAATGAATCAGATAGTACAGTGTGTATTTCTAATATATCGTGGAGCTGATCATCGGCACATGCCTAGTGAATGTTAATGTGGGACGGCTGCGTCTGCGAGCACCTTTTTATAGACAAATTCACTGTGACCCCTCATGTGACCGTCAAATATATGAACAGCCAGTTTACAATGCCAATGATGACATCAAACATCAATGTGTTTCAAATGTTGTTCAAATGAGATTTGGGCTTTTTAAACAGATCTCACATGAGGGACACTGAATTTACAACCTGTGAAAAggtcatttattaaatattaataaataaataagctgacTCGTCACATTTTATGTTCGAATGTAACGCGTGTCTGAAGGACGATTGTTTTTGTAGTAAAGCATATGTAAAAAgtatgcaaatttttttttgtacaaagtCATTGTATAATATGCAAATCatcaaatgtctttttttttgtcttgatttATTTTCGTCGACAACCTCTGgaccataaatataaatgcacgGATCATAATATCGTTACTGAGGGAAGGTTTGTATGTTATACTGTGAAAACAGcaattcattcttttattccaTTACAAGCAGCCAATTTTCTTTGTTCTCTAGTCTGTTTCTCACGTTCAGTTCACAAtgttggaaataaatgttgtttcTCAATGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86223 lncRNA downstream 103137 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 191448 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 195776 28365657 ~ 28379132 (-) True G72720
TU86171 lncRNA downstream 375099 28197991 ~ 28199809 (-) False LOC117597043
TU86306 lncRNA upstream 62081 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 107792 28713034 ~ 28717955 (-) True LOC117597077
TU86345 lncRNA upstream 177681 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 182381 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 227142 28832384 ~ 28833720 (-) True G72893
XM_026936156.2 mRNA downstream 83061 28476431 ~ 28491847 (-) True shha
XM_034304138.1 mRNA downstream 288250 28276696 ~ 28286658 (-) True ro60
XM_034303645.1 mRNA downstream 299593 28238896 ~ 28275315 (-) True cdc73
XM_034303546.1 mRNA downstream 349305 28198023 ~ 28225603 (-) True LOC117597043
XM_034303543.1 mRNA downstream 378851 28174936 ~ 28196057 (-) False LOC113540124
XM_026936574.2 mRNA upstream 5949 28611191 ~ 28619112 (-) True LOC113540234
XM_026936572.2 mRNA upstream 14574 28619816 ~ 28628143 (-) False LOC113540232
XM_026936569.2 mRNA upstream 14574 28619816 ~ 28628143 (-) True LOC113540232
XM_026936570.2 mRNA upstream 14574 28619816 ~ 28628073 (-) False LOC113540232
XM_034304008.1 mRNA upstream 27512 28632754 ~ 28642395 (-) True dcaf8
trnas-uga_2 other downstream 338103 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 338641 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 533123 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 950100 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 953780 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578096.1 other upstream 43082 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 268336 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 268338 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 277085 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 543396 29148638 ~ 29152381 (-) False usp33

Expression Profile