RNA id: XM_034303291.1


Basic Information

Item Value
RNA id XM_034303291.1
length 1772
RNA type mRNA
GC content 0.52
exon number 10
gene id kdsr
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27957885 ~ 27966288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAATCCAACTGACAGCGAGCGTCGGTTCACGGACGTTGCCTGTGTTTTGGTTTGTGTTAGTGAACGGAGTTAGCTAGCTGGAAACAATTAACGGTCGAAGCGCTTGTACAGCGTTTTGTGCTTTTATATCATTACGCTTTTCTAACATTGTAACCAATTACAAATCtgtgaaaaacagtgaaaattttATTCGCTGTCTCTGGCATTGGAAAGAACCATTTATATCGACTCCGTAGTAGAAAGCGTTAGCTTGTCATCAGCTAGCTAGCGCGGCTGGATCCTAAATAGTGTCTCTACTCTGTTAAAGTGCACTAAGTAGTGTGTAAGCCGCGTTACTGTGATATCACATCGAGTGCACGTATATAGGGAGTAAGCAGGGATTTGGGATTCGGCCTGAAGGCTCACCCATGCCCTCCGAAGAGGCTTTTTGGAGCTCAGTAACACTGGACTGGCTTTTCTCACACTCCGGCTGGtcatttcttcctttcattatgatgatgattttagTTTTGGCTGCTTTTATGGTCGCTTTTGTCCTGTTTCTCTACATGATATCGCCTTTAATAAGCCCCAAACCGCTCAAACTCAACGGGGCCCATGTCGTGGTGACGGGGGGCAGCAGCGGGATCGGGAAGTCCATAGCTATGGAGTGCTACAAACAGGGAGCCTTCATCACACTGGTGGCACGTGATGAGGGTAAACTGGTGCAGGCGAAGAAGGAGGTGGAGAAGTGTGCCATAAACGATAAACAGgTGGTGCTCTGCATCTCAGTGGACGTGTCGAAGGATTACAGCCAGGTGGAGAGCGTGCTCAAACAgGCTCAGGAGAAGCTCGGGCCAGTGGACATGCTGGTGAACTGCGCAGGGACGTCGGTGTCGGGGAAGTTCGAGGAGCTCAGGGTCCAGCACTTCCAGagtctGATGGAGGTGAACTACCTGGGCAGTGTGTACGCCACGCGGGCCGTCATCAGCAACATGAAGGAGCGGCGTATGGGCCgcgtggtgtttgtgtgttctcaGGCTGGACAGCTCGGACTGTTCGGCTACACGGCGTACTCCGCCTCTAAATTCGCCCTGCGCGGCCTCGCTGAAGCTCTGcagatggagGTGAAGCCGTATAATATCTACGTAACCGTGTCCTACCCTCCCGACACGGACACGCCGTCATTAGCCGAGGAGAACAAGATGAAGCCTTTAGAGACGAAGCTGATCTCAGAGACGTCTGGAGTGTATCAGCCTGAGCAGGTGGCTAAAGTCATTGTTAAAGACGCCGTGCAGGGGAACTTCAGCAGCTCAGTAGGTCCTGACGGCTACATGCTGTCTGCTCTCACCTGCGGCATGTCGCCAGTCACGTCCATCACCGAGGGGCTGCAGCAGATCGTGACCATGGGGCTGTTCCGCACCATCGCGCTCTTCTACCTGAGCAGCTTCGACAGCATCGTACGCCGCTGCATGATCCAGAGGGAGCAGAATAAAGTGTCCGACAAGACAGAGTAACGCCCATGCTTCCCGCCATTCCACCATCACTGCTCATcctggagacacacacacacacacacacacacaggaaagacGAGTTGCTTATCTGTCAGGTGTCTCAACTTCTCCACGCTCCATTTCACTTTACTCATAAACGTGCTAGAAGTGAGCAGGTGATGTAAACAAGCCCttggggtgagtgtgtgtgtgtgtgtactcaacaaacagccacaacattaaaaaccacctgcctaatattgggTAGGTCCGCcgtgtgccaccaaaacagctct

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K04708 KDSR; 3-dehydrosphinganine reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 398458 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 398775 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 398783 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 398872 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 402179 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 45456 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 148163 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 336563 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 350116 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 502660 28468948 ~ 28471765 (+) True G72336
XM_026936599.2 mRNA upstream 974 27941464 ~ 27956911 (+) True vps4b
XM_026936600.2 mRNA upstream 974 27947400 ~ 27956911 (+) False vps4b
XM_034304025.1 mRNA upstream 18461 27857336 ~ 27939424 (+) False kmt2cb
XM_034303869.1 mRNA downstream 6353 27972641 ~ 28008193 (+) True bcl2b
XM_026937237.2 mRNA downstream 6357 27972645 ~ 28008193 (+) False bcl2b
XM_026937080.2 mRNA downstream 80911 28047199 ~ 28054319 (+) True nmur1b
XM_034303328.1 mRNA downstream 98779 28065067 ~ 28069266 (+) False LOC113539840
XM_026935908.2 mRNA downstream 98780 28065068 ~ 28069266 (+) True LOC113539840
trnat-ugu_8 other upstream 336502 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 337208 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 399983 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 401237 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 468560 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 908068 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1653705 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2779843 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2779843 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 3095442 31061730 ~ 31097888 (+) False spsb4a

Expression Profile