RNA id: XM_034303314.1


Basic Information

Item Value
RNA id XM_034303314.1
length 2111
RNA type mRNA
GC content 0.50
exon number 14
gene id ssx2ipa
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 65830 ~ 84464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTCCTGCTTAAACACCTGCGTGTTCGCGTGTCACATGGTGCGTTGTGAGCCAATCGGGAAGCCGTATCCTGGTTGCCTGGAGACGGTTGCTCCAATGAGAGTCGGGATTAGTGTTTATGAGGAAACAGTGAAGTATTTCAAACCGACCTGTTTGACGGCGTGTAAACACCTGCAGCTCGCGgattaacagaaataaataaaatataaaaataatataaatactcTACTTATTTAAACTCTTTACTTCAACGTGTTTATGTGGATATGATCATATACAGCTCTCCAGCTTCACGGAGAAATAACTGAAGATCCCCTGTGCGTCTGTGTGCGTTTCAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca

Function

GO: NA

KEGG:

id description
K06085 SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67741 lncRNA downstream 27877 32764 ~ 37953 (-) True G57488
TU67738 lncRNA downstream 28150 32764 ~ 37680 (-) False G57488
TU67761 lncRNA upstream 73449 157913 ~ 158767 (-) True G57502
TU67793 lncRNA upstream 92854 177318 ~ 177548 (-) True G57526
TU68151 lncRNA upstream 98592 183056 ~ 183265 (-) True G57706
TU68156 lncRNA upstream 108223 192687 ~ 197666 (-) True G57711
TU68169 lncRNA upstream 119509 203973 ~ 207155 (-) True G57716
XM_034303396.1 mRNA upstream 351 84815 ~ 98060 (-) False LOC117596995
XM_034303395.1 mRNA upstream 351 84815 ~ 98060 (-) True LOC117596995
XM_026912109.2 mRNA upstream 15214 99678 ~ 108094 (-) False bcl10
XM_026912108.2 mRNA upstream 15214 99678 ~ 108093 (-) True bcl10
XM_026911767.2 mRNA upstream 93407 177871 ~ 184973 (-) False LOC113525290
TU67777 other upstream 10964 95428 ~ 98117 (-) False LOC117596995
TU68285 other upstream 206046 290510 ~ 298456 (-) False eif2b5
TU68328 other upstream 364261 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 527779 612243 ~ 614243 (-) True G57830
TU68378 other upstream 599024 683488 ~ 746031 (-) True G57838

Expression Profile