RNA id: XM_034303333.1


Basic Information

Item Value
RNA id XM_034303333.1
length 2135
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113540523
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31353902 ~ 31356972 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTAGTTTACGCAAGGATTAGTAAACGTGGAACCATGTGGGGAAACGACTTCATGTTGTGGTTAAGTGAATATCAGTCCTCTGAGTCAGAGGCTTCAACCCTCCATATCCACGCCCTCTTCTACAGACAGTATTTGGACTTCTCACTCATACTTCAGGAGAAACGAAACTAGCCAGTGTCAGCCTGGTTTTTGGTGctaccaaatttttttttcgaCCAGTACAGATGAAGAAACAGACATGTCTTCAGATCTCAGCTTTACTGCACCCTCAGATGTAGCATGTGATGCATGCCCAGGAAGGAAGCGTAAAGCAGAGCAGTCCTGTTTGCAGTGTTTGGCTTCATACTGCGAAAACCATTTGGACATGCACAACCTTCTGCATGTGGGGAAGAGACACAAGCTGGTGGTGGCTACGGGACAACTCAAACAGAGCGTCTGTCCTGAGCACGACAAACTCATGGAGGTTTTCTGCCGCACAGATCGGCAATGCATCTGCCACCTGTGCattacaaataaacacaaagatCACAATGTCGTCCTGATTGACTATGAGGTGGAGGAAGTGAAACGTAAGCTTGGGAGCACACAGAGGGAGATTACTGACAGGATTCAAACCAGAGAGAGCGAAGTGCGAGAATTAAAACAAGCAATCGAGGCTTTCAAgacatccacAAGGCAGGCAGTGGAGGAGAATGAGAAGAGCTTCACAGAGCTGATCCACTCCATTGAGACGAGACAGAGTGAAGTGAAGGAGCTGATCTTGGCTCAGGAGGAAGCTGCCGTGAAGAAGGCCGAGGAACTTTTGGAGCGATTGCCATCAGAGATCAGTGATCTGAAGAGCAGAGAGTTTGAACTACAGCGTCTGGAGCGGCTCTCTCGAGCAGATAATGGTGTCCATTTTCTACAGGGGATTCTGTCCACTCCAGCATGTTCTTCATCCTCGTCTTCCCCTGTGCTCTTCGTCCATCCATACTCCTCATTTAAGTTCGCCACTGAAGCTGTCTCGGACCTTATAAAGCAGATGAAACATGTTTGCGATTTGCACTTCACCAACATCTCTGTACATGTGCAGACGGCAGAAATTCTGACATCGCCAGTTTCGAAAGTGCGGGAAGCTTTATTGCAGAATGCTTCCAAGCTCACGCTGAACCTCAACACGGCACACGCGTCTTTCCGCTTGTCCAGAGAGAGCAGGGAGGTGACTGCCGTGCACGCGGCACAGGATTACACCGAGCATCCGGACAGATTTGACTGCAGAGCACAAATCCTTTGCAACGAGGGTCTTCAAGGCACGCCGCAGTACTGGGAGGTGGAGTACGGAGGCAGCAGCTGGGTGTGCATCGCTGTGTCCTACATCGGAATCGACAGGAAGGGAAAACGGGGTCCTCTCTTCGGCAGAAACCGCTGTTCCTGGGGCTTACGCTGTTATTCCGCTTCCTACGAATTCTGGCATAATAATAAGCACGTTTCAGTTAAATATAACAAACGTTGCTCCAGAATAGGCGTGTATCTGGATCATGGAATAGGTATTCTGGAGTTTTACAATGTCTCAGATGATATGAGGCTCATCTATAAGGCACAGATCAAGTTTACCGAGCCTGTGTATGCTGGGTTTGGACTGGCAGGGAAAGGGACTCACATCAAGCTCTGTgatttggaggaggaggaaaagaccatgaaggagaaaaacatgttgttttctTACTCGAGTAACAGACTAACATGAAGGAACTGGAATAGAGATtgttaaaatgatataaaacttGTAATGATTTGATCCTTAAGTGCCTTATGGAtgtacagggttttttttgtgtgtgtgtagttctacCAAACCAACAGCAGGGGGCAGAATAGATTGTGACTATGAATCtgattctctccctctctctctctctctctctctctcttttctctgtataGATAACAATAGATAGAAAtttgttacaatggcattttATTGTACTGTACCACAACATTGTTGATTTCTtgaatccgattggtcagaaagtgttctacgttatcatttctataaaacTCATTTACAGATTCTTCTATGGCAGAAGTGTCACTCATTCataaacagattatttaaaaaaacaacattatttaacaaagaaaaacttataatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87968 lncRNA downstream 42993 31236413 ~ 31310909 (-) False G74256
TU87974 lncRNA downstream 76881 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 78428 31236413 ~ 31275474 (-) True G74256
TU87963 lncRNA downstream 127314 31225234 ~ 31226588 (-) True G74255
TU87756 lncRNA downstream 237466 31056485 ~ 31116436 (-) True G74060
TU88199 lncRNA upstream 210079 31567051 ~ 31650584 (-) True G74417
TU88244 lncRNA upstream 379320 31736292 ~ 31785757 (-) True G74458
TU88271 lncRNA upstream 387379 31744351 ~ 31745462 (-) True G74479
TU88242 lncRNA upstream 396149 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 396149 31753121 ~ 31756304 (-) False G74457
XM_034304133.1 mRNA downstream 8918 31290821 ~ 31344984 (-) False carmil3
XM_026937089.2 mRNA downstream 8918 31290821 ~ 31344984 (-) False carmil3
XM_026937088.2 mRNA downstream 8918 31290821 ~ 31344984 (-) True carmil3
XM_026937091.2 mRNA downstream 30682 31290821 ~ 31323220 (-) False carmil3
XM_026936925.2 mRNA downstream 76653 31247060 ~ 31277249 (-) True rem2
XM_026936251.2 mRNA upstream 3675 31360647 ~ 31364271 (-) True LOC113540063
XM_026936968.2 mRNA upstream 22501 31379473 ~ 31502378 (-) False LOC113540461
XM_026936967.2 mRNA upstream 22501 31379473 ~ 31502378 (-) True LOC113540461
XM_034304039.1 mRNA upstream 22501 31379473 ~ 31469641 (-) False LOC113540461
XM_034304040.1 mRNA upstream 22501 31379473 ~ 31456523 (-) False LOC113540461
TU87656 other downstream 578083 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 610076 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1331377 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1623045 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1778175 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 510110 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 513546 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 514187 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 517337 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 523062 31880034 ~ 31880556 (-) True G74550

Expression Profile