RNA id: XM_034303351.1


Basic Information

Item Value
RNA id XM_034303351.1
length 3534
RNA type mRNA
GC content 0.43
exon number 4
gene id oprk1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22749865 ~ 22757329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGTCGGTGTGTGTCTCTGCGGGCGGTTCAGGCAGTTCAGTGCGCTCTGATGTCATCAGGCGGCCACAGCTGGAGCGCCTCTATAGCGCCAGTGCGCGTGAAAAACGCATCCTGTGCGGGAACAAACACGCATCCTACTGCTTTTACCGCGTCGGAGAGTTTCTCTaaggctttttttatttaaacgaACTAACGACAGCACGaggagaTGGATGTCAGCGTGATGCAGATTTTTAAAGAGGATCAGTGCACATCTGGTGTTGAGGAGTGTTTGGTGAACTTGGACTCGCTTTCGGAAGCGCCTCTGAACTCCTCAGGGAATGAGAGCTGGCCGAGTGAGGTCGAGACCCTGTCCCCCATCGTGCCTGTCATCACAGCTGTCTACTCCGTGGTGTTCGTCGTCGGCCTGGTGGGAAACTGCCTGGTGATGTATGTCATTATAAgATACACTAAGATGAAAACAGCCACCAATATCTACATCTTCAACCTGGCAGTTGCTGACGCCCTTGTGACCACCACCATGCCCTTTCAGAGCACAGACTACCTGCTCAACTCATGGCCCTTTGGAGAGGTGGTCTGCAAGGTCTTCATCTCCATTGACTACTACAACATGTTCACCAGCATCTTCACTCTCACCATGATGAGCGTTGACCGCTACGTGGCCGTGTGTCACCCAGTCAAGGCCCTGGATTTCCGCACACCCGTCAAGGCCAAGATCATTaacatcctcatctgggtttTGTCCTCGGCTGTTGGCATCCCGGCTATGGTCCTTGGAAGTACGCAGACCAACAATGGCACTACAGAGTGTGCTCTGCAGTTCCCTGATCCCTATGTCTACTGGGACACACTGATGAAGATCTGTGTATTTGTCTTTGCTTTCGTGGCACCTCTACTcatcattagtgtgtgttacacactgaTGGTGTTGCGATTGAAGAGTGTTCGTCTGCTATCAGGCTCACGTGAGAAGGACCGTAATCTGCGGCGTATCACGCGTCTCGTTCTAGTGGTGGTGGCTGTGTTCGTCGTGTGCTGGACGCCCATTCATATCTTCATCCTGGTGAAGGCTCTGGCGCCTGACGTGCCTGAGACCACAGCCGTCATGGGCGCCTACTTCTTCTGCGTGGCACTCGGCTACACTAACAGCAGCCTCAACCCCATTCTCTATGCCTTTCTGGATGAGAACTTCAAGCGCTGCTTCCGCGATTTCTGCTGCCTGACTCGAAGCAAGGCAGACAATGTGGGAGTGACACGGGTCAGGAGCACCCTCCGCGAGCACACATGCCAGGCAGAGGGCAGAGGTGAGGAAGGCCATGGCAGATCAGTATGACTAGCTGTGGAGCTCTCCTCCTTCCAAGGCCTGGAAATCTCCAGTGACCTGGGATTGACACAGATCACCACCACCTTCTGAGGAGAAGACAGATGAAGATGGGCCTTTTAGGTGCGAGAGCTGTATCCTTAGGGAGTTCATATAAGGAATTGTTCcataatatagtgtataaaatcaGCGTTTCATTCTACTTATGGTTAGCCATGTTCATTTTCCTAGATTCACTTCAGTAGTCTtattaataaatactaaaagCTTATCTCAACAGTTTAACTAAACATAGTCTTATTACCCAGAACGTCTGAAGGGTTCAGAAGAGCTTTAGATTCTGATGGAGTTTCTGGTAAGGTGCTGGTGCTGTTAAGGGATAAAACAGACACCAGTTCCAGTGATTAGCCAAATCAGCTGATTTGCCTGCAATGTGACTTTTTGAAACTTCTACACCATGTACATATTCTGAAGAGGCTTTAATTCTCCCTGTTCATGAACTCGGCTGAAACAGAGGCCAAAGACACCGTCTGATAAATTACGAATGACAGTTGTAGGTGATGCTCCATATCTGAGCATTATGCAGTTGAATTCTCCATTTACGTGAATTATGAAAGAAAATGGAGCTTGATGCAAAGGGAGTTGGATGCAATGGGTTTTACTTCATATGTGGGAATGAAAAAAGAACTATGTGGACATATGAATGGGGATAACTTTTTTGAAGACTGTGAATTAATCATTTTATACAAACATGGCATAATTTCACCAGTgaaacatcagtgtctgattttatttttggaattgtCTTCAGCAACATTTATCTTTGTCTGCAGGAAAATAACTGTTATATATATACTAGACATTAAGAACTGCTGGTTTTCACTGCATTTTGTAAAtgatcatgtgtaaaaaaaaaaaaaaaagtacttgcTTCTTAGGGATTTATGCTaaaaaatcagaatcaaatTTGATATTTAGTCATGGCTAAAAATATTTGATATCAAAAGAGGTATCaagaaaataattcatataCCTCTTGCTGCAAATCTTAGATGTAATTTTTTGGACAGAGGGCtatacaaaaactaaaaaacttGAATCTGTTGTTAAGTTGTTTGTGTTAGATTCCATTTGGTGTCTTACTCGAAAGAGTAAGAAAATATTCACATAGATCTTGGTGACATTTGAACAGAATATCATTGTCAGTAAAGTTGTGATTTCAtctaaacatattaaataatcaTGTGATAAATTATGCTATGGTACTTTTCGATATTGTCTAAAGCAGCACACTGTAAGTCATTAGGGAAAGGAGGTCTTTTCAAATATTTCCATGTTTATGTGTTTGGTCATCTTTGGTCATGCAGTATTGTATATTAATGTAAGTGTTGACTATGTAAATGGGCTtgcctataaataatgattAGTGACAACATCTGTGGCTCTGCAAAACAACATGATCTTAAGGTACTCATACAGTATGTTCTCATTACAgcatagtgcattttattttccaaaacacTTTCGGGAGAGAGGAGTTtggattatattttttaaaaaaaattgtcttgtCACCTTTTTTTTGGAACAGTACCTTTTCCATTGTACTTATTGTAATGTGGTTGTACAGTATGAGATATTGCATTATTACTTacttgctgttttgtttgtttattgcttttgaTTGATGCACTTTCTTCACTTTCTAAAAAGTAAATACAGTAACCAACTATTTGATGATAGGGAGCAATGTCTGGGGCCAGCACGGTGGTGCAGGggccacctcacagctctagggtccccagtttgatcctgaacttGAGTTTTGCCTGCTGTCCCCATATCTGTGTAGTTTTCCTTCAGATTCCCTGGTTACCTCCCACCTGCTAAAAACATTATGGTAGATGATTTGGTCACGCCAAATTGCACCTAGGTgtgattgtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatagtgccctgtgatggattgacATCACACAGGGTGTTCCCAGCATTCCCAGGTTTGGCTCACcttaaccctgaccaggataaaatggttcctgaagatgaatgaatgagtctTGTTTGTGCCAGTAGCTACAGTGTTATGTGGCTTGTATGTAACTTGTGAAAACTATTACTAaattaaacagtgtaataaaataataaaataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042277 peptide binding molecular_function
GO:0004985 opioid receptor activity molecular_function

KEGG:

id description
K04214 OPRK1; kappa-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 97418 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 222309 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 352764 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 362120 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 505040 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 169481 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 244669 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 527225 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 534081 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 573704 23331033 ~ 23331529 (+) True G69514
XM_026936312.2 mRNA upstream 12098 22702979 ~ 22737767 (+) False atp6v1h
XM_034303663.1 mRNA upstream 12098 22702979 ~ 22737767 (+) False atp6v1h
XM_026936311.2 mRNA upstream 12098 22702979 ~ 22737767 (+) False atp6v1h
XM_034303661.1 mRNA upstream 12098 22703138 ~ 22737767 (+) True atp6v1h
XM_034303662.1 mRNA upstream 12098 22703398 ~ 22737767 (+) False atp6v1h
XM_026936922.2 mRNA downstream 8934 22766263 ~ 22769071 (+) True chmp5a
XM_026936082.2 mRNA downstream 13644 22770973 ~ 22774754 (+) True bag1
XM_026936914.2 mRNA downstream 19310 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA downstream 19311 22776640 ~ 22805934 (+) False myom1a
XM_026936107.2 mRNA downstream 51533 22808862 ~ 22837839 (+) True lpin2
XR_004578015.1 other upstream 987564 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 561175 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1351466 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2101697 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2950498 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3140806 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile