RNA id: XM_034303408.1


Basic Information

Item Value
RNA id XM_034303408.1
length 2687
RNA type mRNA
GC content 0.45
exon number 4
gene id si:ch211-119o8.6
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31239568 ~ 31244079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttgtggaagATCAGACACACTtgatttaatctgtttaatgcAAAACCTAAATAGGTAGAAGACACATTGGTCTATAATTAACATGAAATTGAACCTTAAATGTGTTTTGTCAGGAATAGTAGTAAAGAGGTAGAAATAGTTTAAAACAACCCCTGAAGAGCAACACTTGTTCTCCTCTCCAGAAGATGGTGCTGACATTCCTAATCAGCGTTATAGTCAACCACCATAAAGTCCCAGAGGAAGAAAATCCATGCACATGCAGTGATAAGTGGGCACTGAGTCAAACCTGTCAGTGGTTAACTGTGTGCTTGCACTTGTAGCTGGAAAGATACTGCATTTTCTCCAGTGTGTAGGACCATGACCATGACCATGACCAGGGCTGGAGGGCGAGTTCCCCCTGCAGACAGCACATGTGTGTTCTGTTTGGGAGGCTTGAACAATCCTGTGGTTTTAAGATGTTCCCACAGGTTGTGTAAAAGCTGTGTGCAGAGTTACTGGGAGATGACCTGGTCTCTGAGATGTCCTGTTTGTTTGACAGAGACATCGTGTAAAGTGTCTTTACGAAAAGTGAGTTCTGAGGGAAACACAGAAGGGAAAATGACACATCCAAAGATGTGGCCTCAAAAGGCAGCGAGCACTGTGACTTCAGAGGAGCAGGAAAAGCATGGTACTGCAACGGAGATGAGGCGAAAATATGAACCAATAGAGCTGAAGATATCAGCCTATTTTAACGTCCAGGAAACTGGCACACATGGGTTTAAAGCGGAGGATGTCACTCATTTAATGAAGCAGCCCAGAAGATGCAGATTAAAGGATGAAGAACAGTTTGCAAAAGTTGAGAAGAAAATACTTTCTTCTCATTTGAGATCCACGGCAAGAAAATCTTCCAGTTATGTCCCGAACACAAGTATGGACTCAATGGATCTGAAAGCCCAAACTCCTTCAAATGCACCATCATCTTCAATGGCCTTGAGAGCCAATCTGTGCCCTGAGTGTGGCAAGAGTTTTGAAAGCGAATCAGCCCTGAAAACCCATCAGAAATGCCACTCTGTACAGCGGCCGTATGGGTGCTCCAGCTGTGGAAAGCGATATACTCGGAAGAAGGAACTTGGATTACATCAGCGGCTACATACGAATGAGAGGCTACTCCATTGTGCCTATTGCAAAAAGAAGTTCACAAGGAAGAGAGACCTGATATGCCATGAAAGGAGtcacactggagagaagccTTTCCCCTGTTCTTTGTGTGGGACAAGCTTCAGTAGGAGAAGCGCGCTAAAACTGCATATACAGCGACACAAGGGGATCAAACTGTACCAGTGTGACCAGTGTGGAATGTCTTTCCATACATCAGCAGCCTTGAGGGTACACAAGGCAagacacacaggagaaaagccTTTTGCTTGCCATCAGTGCGATAAGAGATTTGTTCTGAAAGCTCACCTGGACAGTCATTTGCACAAACACGCAGGAGACACGGTCTACAGTTGCTCAGTGTGTGGGAAGGCTTTTAGGTGGAAGCAGAGCCTTACCATCCACCAACTAACTCATCGGGAAGAACGGCCGTTTAAGTGCCCAGACTGTGACAGTAGCTTCAGACGAGCCCACCACCTCAAGTCGCACCAGATGACCCACTCAAGTGACACGCCATACAAATGCAGTCATTGTGGCAAAGCTTTCAAGTACCGGAATTCCCTTAAGATTCATGAACGCATTCATACAGGCGAAAAGCCCTACTGCTGTGATCAGTGCAGGAAGCATTTTGTATCGTCGGGCGAGCTGAGTGTCCATCGGCGAGTCCActcagaaaaaagaaactacAAGTGCTCCGAGTGTGAGAAGACTTTTCGATACATGCCTTCCTTGAAGGTCCACCAGAGAACGCACTCTAAGGAGAGACCGTACCATTGCCGTGAGTGCGGTAAAAGCTTTTTTGCTTCCTCCCATCTCCGAAACCATGAAGAAATGCACAAAAACGAGCGACGCCACCGTTGTTCCGAGTGTGGTCAGGGTTTTAACTGCTCCAGCACTCTGAGGTCCCACCAGATGACCCATTCGACCAGGACGGAGTTCCGTTGCGAGGAATGCGGCAAGACTTTCATCCGCAAAGAAACCTTTAAAACTCACCAACAGATCCATACAGGGGCCAGAGTCTACAATTGCTCGGAGTGCGGAAACAGCTTTAGCAGCTCCAGCAACTTACAGCGACACATGCAGAACCACAAAGTAAAGACAATGTATCACTGCAGCGAGTGTGAGAAGAGTTTCAGTAGCGCGGCATACCTGAAGAAGCACCAGCTAGCCGTGCATGCGGCAGAGATGCCATACGTCTGCGCAGAGTAAGGGGAAAGCTTTGATGCTGCTGCAATGCTGCTAGCTGAAATACTCGAGAGATCCTCGCAGAGTGGGATGAAAGAATcgctaaatttttatttaaaaaataaaaccatgagGACAAACCGGCCTATTGCAGCATGTCCACAGGTGGGGAAAGTTTGTCCTTTATTTCAGTTTGTcagtgtaaattttttttattgtcaatCCAGATGTTTTCCTTCAcaaacttttttcatttcaatatCTGAatggcaaatattttttttatggtttgcccttggtgtgtgttagtgatatTTTCAGGCCAAATGGTAATGtgagtttgtaaaataaatttaatttccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87688 lncRNA upstream 208198 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 221094 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 466682 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 516766 30721031 ~ 30722802 (+) True G73935
TU87504 lncRNA upstream 645959 30593234 ~ 30593609 (+) False G73844
TU87857 lncRNA downstream 3011 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 111475 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 280024 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 283777 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 287374 31531453 ~ 31533223 (+) True G74309
XM_026936712.2 mRNA upstream 2667 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA upstream 2667 31222287 ~ 31236901 (+) False copb2
XM_034303992.1 mRNA upstream 18548 31218928 ~ 31221020 (+) True LOC113540056
XM_026937114.2 mRNA upstream 27235 31130107 ~ 31212333 (+) False clstn2
XM_026937113.2 mRNA upstream 27235 31133269 ~ 31212333 (+) False clstn2
XM_026936980.2 mRNA downstream 107122 31351201 ~ 31353130 (+) True c4h22orf39
XM_026935828.2 mRNA downstream 304201 31548280 ~ 31560707 (+) True prmt5
XM_034303928.1 mRNA downstream 322202 31566281 ~ 31581540 (+) True ap1g2
XM_026937095.2 mRNA downstream 340021 31584100 ~ 31586755 (+) True zp3f.2
XM_034304000.1 mRNA downstream 343182 31587261 ~ 31594687 (+) False LOC113540625
TU87706 other upstream 141680 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 472436 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 472436 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1616531 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2327464 28874356 ~ 28912104 (+) True G72873
TU87898 other downstream 107182 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 525743 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 701969 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 714943 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 714963 31959042 ~ 32330845 (+) False LOC117597173

Expression Profile