RNA id: XM_034303413.1



Basic Information


Item Value
RNA id XM_034303413.1
length 3883
RNA type mRNA
GC content 0.47
exon number 28
gene id si:ch211-106h4.4
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23181870 ~ 23214191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTCTCACCTCTCTGTGCACACTTCAGAATGTCAGGCTTGTTCTTTCTACTACTTGCTCTTGCTACCTGCTCTACTGGACAATTCCAGGGTGTTTTGCAGAACCATCTGTCTTATAAGAAAGTGTGTGATTTCAGTGCCAGCTATACTGATGGGTCAGACCAAGAGTTCTATGGTTCTTGTGATTTTGAGAAAGATGCTTGTGGATGGAAAGATATCAGTAAGAATGAATTTCGGTGGAGGCTTGAGAAGGCAAACATCAGCAGTATCCCGGGTGTGGACCATACCACTGGAACACCATGGGGTCAGGTCATGCATGTAGAGGGTGAGAACCCTGTGTTTTTCTCAAAGGCAATTTTGGAGTTTTCCTTCCCTCAGCACACTGCACTTGGGTGCCAGATAAGCTTTTGGTATCATCTTCATGATCCTCTTGGTATATCCTCTAATTTTGACCTAAGCCTGGACACTAATGGGTCGTCTGTGGTCTTGTGGGAGATTAAGCAGGGGCAGACTAATGGTTGGGTGAATACGACTGTGAGAATTGGAAATCGTCCAAAAGGATCCAAGCTGTTGTTTTCTATTGTTCCAACTTATATTGGACATCAAGATATAATGATGGATGACATTACATTGATGGGCTGTGCAGAAGGGGATATTCCTGCAGGCTCAGAGCAGCTCAGCTGTGACTTTGAGAGAAACACTTGTGGTTGGTACATAGACCAGTCTGCCAGTCTCACCTGGGAGCGGAAAAAACCCTCATTTGACAATCAGGGACCAGGACATGACCAGACAACTGGTTCTGgttattaTATGTTTGTTGCAACAAAAAAGAACTCTAATCCATCAGAGACAGCAAGACTAATCAGTTATCCCCAGCAAGCCAAATGTGTCAGCTTCTGGTATCATATCTATGGTGCCAGCATTGGCTCTCTCAGATTTATTTCTAAGAACACTAATGGGACAGAGACAGTCATGTGGACTAGGACCGGTACACAGGGTAACAAATGGCGCTTTGCAGACCTTAGCTTTGCCACCAATGATAGTCCAGTACAGttcatCTTTGAGGCTATCTTAGGAGGCACTGATGGCAGTATTGCTCTAGATGAAGTGCAGGTCTGGAGCAGTGTAAATGGATCGTGTCCACCTGAGAGAGAATGTACATTCCAGAGCTCTCTGTGTGGCTTAGAACCTGACCCTGTAGCTGACTTCCCCTGGGTCAGAATCACAGGAATGCAGGCTGCTGGTTCTGCTAGCCCAAGCAAGGATCACACTCTTGGCACTGACCAAGGTTACTACCTGAGCGCGCAGCTGTGGGATCGGCCAAGTGGTAGTCAAAGTCGCATGGTGACACGTTTTTATGAGCCAAATCTTGAGAGCGAGGAATGCTGGATGTTCTGGTATCATATGAGTGGGAGAGATGTGGGTATGCTCAGTGTGTACCTGCATGAATCACACAACTCTCGAGTTACTCTTTGGAGCCGCAGTGGGGATCAGGGAGAACGGTGGAGACCTGGCCGAGCCACTGTAGTCACCCCTCTCAGCCCTTACCAGATCGTATTTGAAGCAGTGGCTGGGGAAGGTCAGGTTATGGACATTGCCATTGATGATCTGAGCGTATTGAATGGGCCTTGTCCACCTCACGGGCTGTGTGATTTTGAGATGGACCTGTGTTACTGGGTAAACAGTGCTCTCAGCAACCATAGTGTAGCCTGGAGCTGGACTTCTGGAGTCAGTGCCTCTTTGTTTGCACCTCAGGTGGACCACACCACCAATTCAAACCTGGGACATTACATGGCCTTTGATACAAAGCACAGCACTTATGAGCAAATTGCTTATCTTCAGAGTGAGCTGATGCAGCCAACGGACCGTGCATGCCTGGAGTTCTGGTACCATATGGATATGTGGCATGCTATAGAGAAACTCACACTAACAGTGTATGTGAATGAGTCAGGCATATTACACTTCCTGTGGAATCAGACTGGCACTCAGGGCAGAGTGTGGCACAAAATCACACTGGATTATGAAGCATCAGAGCAATACCAGCTTGTGTTTGAGGCCAAGCGGCCACCACATCATGGAGGGGTTATTGCCTTGGATGATATCTAcatcagagagagtgtgagcTGTGCAGATGTGATCACCACAACACTAGCCCCCACTACACATCCCACAACACCACCTGCATCCTCCATGGACTGCAGCTTTGAGGATGGACTATGCAACTGGGTTCAGGAAAGTGGGGATGGATTTGACTGGACTCGTCAACAGGGTCTGCAGTTAGACACAAGCAACAAAGGACTGCTTTATGACCACACCATTGGAAATAAGCATGGTTTCTATTTGGCTCTGAATATGTCTGGAGACAAAGATGGTGAGACAGCAGTCCTTTCTGCCCCTGTAAATATCCAAGCCCCAACAATGTGTGTTGGATTCTGGTATTTCATGCAAGGACCATCAGTGGCAAAGCTGGACCTTGTGGTTAAGATGaaaacaacagaattggTTGTTTGGACTAGAAAAGGTTCAGAAGCTGCTGAGTGGCTGAAAGCACAAGTCACAGTCAACTTGGTGGACACACAGAGAGTGAAATTCACTGGTAGTAGAAATACCAAAAGCAGTGGGTTCATAGCACTTGATGATGTGAGAGTGATCCCAGGTGCCTGTAAAGATCATAGCCCATGTGGCTTTGAAAGTTCTTCCCTGTGTGGATTTGATCAGGATATAAGTGATATCACTCACTGGCTCCGTGTGAACGGCAGCACTGGCCATGTTGATCACACATACCGAACTCAAATGGGTCATTCAATGGCTGTTTTGGGAAAGGAGCTTCTGAAGCCAGAGACGACACACCTCCTGACTCCGGCATATAGTAAAACAACCGAGTCGTGTCTACAGTTCTGGTACTGGCTGTCTGCTGGATCTGGTGATTCTCTCTCAGTGCATGTTTACCTAAACGGAGAGCTGGGTCCTGCCCTGTGGTCTCTTTCTGGAGTGCCTTCTACAGGCTGGGAGGTGGCAGAGGTCACTGTATCTTCTCCAGCCAAATTCAGGGTGGCATTCAAGGCAAAGCTAAGTCCTGGCCAGGAGTCTTTCATACTTCTGGATGATGTGTCAGTGAGAAATGGAGCTTGCCTTCCCACAGGAAGCTGTGATTTCGAGTCAGGGCTGTGTACATGGGTGAATTCAGATGTGGATGACCATGACTGGGTCCATGCAGATGGACATGCAGGCGGTCCTATGACtgatcacacaacacacactacagatgGCAGGTTTATGTTATCTCACATGACCAATCTAGACAACAGCAGCACGGCTATGCTCATCTCTGAGCAGATCCAACAAAGCTCTGACTCCTGCCTCTCGTTTTGGTATAACGTGAATTACAGTAACTCAGGGACCTTGCGAGTGTTTTTGGAAATAGAGAACACACAGCGAAGGCTGATTTTTAAAACAAGTGCTGCTGAACACAGCTGGAGAAATTTCTCTACCACAGTGTCTGAGACCAAGCCTTATAAGATTGTTCTAGATGCAGAGTCTGAAAATGGAGGATTTATTGCTGTGGATGATATAACAGTTACAAAAGGGCAGTGTAAAGAGGGGACTGTGGTGAGTGGGGTATTTGTTGGGTGCCAGTTTGAGATGGATAGCTGTGAGTGGAAAGATGTGAGTGTGGGACAGTTTTCCTGGCAGCGGGGTACGCAACGGAACAGCTTCAGATAACACTGGGCCCTCAGTTGACCATACTACTGGCACAGAACTGGGCTGGTATATGGCAGTAGATGCCAGTAATGGAGAGCAGAACAGCTATGCCGCTCTACAGAGTCCTGCTATGAGACAAGCCAGCACTGAGTGTATGCTTGAGTTCTACTATCACATGTATGGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU82192 lncRNA upstream 177768 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 243129 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 529423 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 654314 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 784769 22392839 ~ 22397101 (+) True G68954
TU82369 lncRNA downstream 82585 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 89441 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 129064 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 165692 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 245494 23447463 ~ 23457206 (+) True G69570
XM_026936910.2 mRNA upstream 37784 23124180 ~ 23144086 (+) True cacnb2b
XM_026937129.2 mRNA upstream 72167 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_034303646.1 mRNA upstream 78082 23054500 ~ 23103788 (+) True LOC113540574
XM_026936345.2 mRNA upstream 143716 22999911 ~ 23038154 (+) True yes1
XM_026936107.2 mRNA upstream 344031 22808862 ~ 22837839 (+) True lpin2
XM_026937016.2 mRNA downstream 13106 23215075 ~ 23230453 (+) True si:ch211-106h4.6
XM_026936338.2 mRNA downstream 71554 23273523 ~ 23276801 (+) False ackr4a
XM_034303654.1 mRNA downstream 71576 23273545 ~ 23276801 (+) True ackr4a
XM_026936337.2 mRNA downstream 71576 23273545 ~ 23276801 (+) False ackr4a
XM_026936872.2 mRNA downstream 143089 23345058 ~ 23349627 (+) True rnf182
XR_004578015.1 other upstream 1419569 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 116535 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 906826 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1657057 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2505858 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2696166 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile


XM_034303413.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_034303413.1 Expression in each Bioproject

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XM_034303413.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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