RNA id: XM_034303420.1


Basic Information

Item Value
RNA id XM_034303420.1
length 8608
RNA type mRNA
GC content 0.48
exon number 34
gene id dennd4c
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18964454 ~ 19014305 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatgtgtaagGTGATAAAATAGAAGTGGAGCAGAGTGAGTGGCTGTTCTGGGCGGCTCCATTCCGCCTCCAGGACTCGCAGAAAGCTGAGAGCTCACAACGAAGTAACGCGACGCAAACATGGCGCCCACTCGCAACGCTGCACACCGCTGAGAGTAACGACAGCGCGGGGGAAAGTTTCCACGGATAAGCGGCTCACTCTCGTTTTGGACGTCCAGCGGCCATTGGTGTGAGAGTCTGGAGACGGTGCGAGGGATAGCTGAGAGCTGCACGTCCAGCCATGATTGAAGACAAGGGTCATCGTGTGACGGACTACTTCGTGGTGGCCGGACTGACGGACAAGTCTGTACCACTGGAGCATGATCTGTCTGAGACCAAATCAAGTGGTCCTAAAGCCCCCATCATTGAGGTGGCAGTGATCAACAAGTCAGCAGGTGAAACGGTGCCTGAGGGTTTTACATGCATAGAGACTACATACAGCGGCCAACCGGCCAACCTCAACCACGGCAGCCTGAAAAGCCCCGAACTCTTCCTGTGTTACAAGAGAGGCCATGAAAAACCTCCCCTGAGCGACGTTGGGGTGATGTATGAAGGGAAGGACAGGCTGATCCACGGCTGCGAGGTGATCCAGGCCACACCGTACGGCCGTTGCGCTAACGTCAACAACAGCTCAGCTACATCACAGCGCATCTTCATCACGTTACGTCGCGCGCCGCCCATCCAGCCCCGCAACTCTCTGGCCGTCACTGACATCTGCGTGATAGTCACGAGCAAAGGCGAGACTCCTCCACACACCTTCCTCAAGGTGGACAAGAACCTCAACTGTGGCATGTGGGGGTCCAATGTGTACCTGTGCTATAAAAAGTCAGTCTCCTCTTCCAACTCTATCGCTTATAAAGCAGGTCTGATCTTTCGCTACCCAGAGGAAGATTATGAATCTTTCCCCCTTTCTGAGTCCGTGCCTCTGTTCTGCCTTCCTATGGGGGCCAAGATTGAGTGCTGGGCTCCCAACACACGCTACCCCTTACCTGTCTTCTCTACATTCGTCCTGACCAACTCCTCTGGGGAAAAGGTCTATGGTGCAGCCATCCAGTTCTACGAGCTCTACCCAGCAGATAAACTGACTGAGAAGCAGAAGATCCAGCTTGGACTCCTTACAACTGTGGACAAGAAGCCCATTCCCGATCGCACAGTCAACACCAACAAGTGCATCTGTCTGCTGTCTCGTTGGCCCTTCTACCAAGCTTTCAAGgacttcctcttcttcctctacAAGCTCTCGGTCAATAGCGTCAACCCTCTACCTATAGAGAAACACATCTCCCATTTCATGCACAATGTGCCGTTTCCCTCCCCACAGAGACCCAGGATACTGGTCCAGCTCTCAGCACATGACAGCTTAATGCTGTCCCAGCCCGTATGTACACCATTACCACTAAGTGGTGCAGACTATAGCACTCTGCTAACTAACCTGGGCCCAGAAAACTGTGCCACGCTGCTGCATTTCGTCCTGCTGGAGAGCAAGATACTACTGCACTCCCTCAGACCGGCTGTATTGACTGGTGTAGCTGAGGCTGTGGTGGCGATGATCTTTCCTTTCCAGTGGCAGTGTCCCTACATCCCtctgtgtcctctctctctggctgGGGTTCTGAATGCGCCCTGTCCTTTCATTGTCGGTGTGGATTCCAGATATTTTGACCTCTATGATCCCCCACCAGATGTGGTTTGTGTGGACCTGGATACCAACACTATCTACCTGTCTGATGAGAAGAGGAACTCTAGCTGGAAGAATCTCCCAAAGAAGCCTTGCAAGAGCCTGATTAACTCGCTGGTCAACCTGCACCACCAGCTTACAATTGTGAGGCGGACTGTCCCAGAAGGCTCGGTGGTAGAGATGACCCCAATGGAGGCTGACTTCACATGGCATAAAAAGACGATCGCTCTCGAGATGGAGATTCAAGAGGCCTTCCTGCGCTTCATGGCCTCAATATTAAAGGGCTATCGATCCTACCTCAAACCCATCACCGAGGCACCCTCTGAGAAGGCCACTGCTGCTGACTCTCTCTACGATCTGCAGGGGTTTTTGAAGAGTCGCGAACGTGCTTACCAGAAGTTCTATTCCCAGCTCACCAAGACTCAGTTATTTATTCGCTTCATTGAGGAATGCACCTTTGTCAGCGATAAAGACACTGGCCTGGCCTTTTTTGACTACTGCATTGAAAagCTTTTCCCATCTGATAAAGGAACAGACAAAGGCACAAAGGTTGAAGGAGAGCTGTCAGAAGACACCAGGCTGGTAGAGCTGGATGAGTCTCAGAAGAGCGAGCACACTGTCTTTATCTTGCCTCCAGAGCCCCCTGCCGATGATGGCCCGGATCCTCCTCCGAAATACAGCTACAAGAGCTTCCCTCGCTTGCGGCTGGAGTTATTTGATCGTCCATTAGTGCCGAAGCCAGCACTCAGCACCAGAGCCGCAGGTGCCAGTGTGTCCAGCAGTCCTGCACTCCTGGCTAAAAGAACCAAGCAGGAAGTCAAGCTGGCCTACAAGATGGCAAAGCGCTTCTATTCGAACCCTCAGTTGTGGGCTAAGTGTCTGTTCAGCCACTGCTATAGCCTGTGGTTTATCTGCCTGCCTGCAGGCATGCGTTTGGCTCAGTCCAAACCCCGTGCCATGCAGCAAGCGCTCGATGTCCTGCTCAAGATGAGGAGCTCTGAGGTACAGGTGCTGGATGAGGTGTGTTACCGTGTGGTGATGCAGCTGTGCGGGCTGTGGGGAATGCCCGTCATGGCCGTACTTGTCCTAATGGAGATGAAGAAGGCCGGCGTTGAGGCCAATGCCATCACTTACGGATACTACAACAAGgctGTTCTGGAGAGCCCTTGGCCTAGTCGAAACCGCAGCGGCCGCTTCATGTGGACTAAACTGAGGAATGTGGTGCGAGGGGTGGCCCAGTTTAAACAGGCTGTGCGGGGAGAAGCTCAGTCAAAAAGAGCTCCTCCTATTACAGCAGTAGTGTCTCTGGACGCAATAGCAGATGGTGATGGGGACAGactcagccactgcagtgccGACAGCTCCAGTGAACCTAACGGAGAagaacacacactgttctcaCACGGTCTGATTGTGGCAGACAAAAATGGGAGTCAGTGTAGTACAGGGGGCCAGTCTGACCAAGGTTATGGCTCTAAGGATGAGCTCCATCAGGACTCTGTCGATGCTTGTAAAACTACAGCCTTTCCTCTCTCTGATGGTGACCAAGCCAACAAGAGCAAAACAGTGAAGAGTCAACAGAATGTTGAGGATATTGCTGGCTCTGTGGATAGTGCAGTGGCTGTGTCTGAGCCCCCCAGTCCTGCTGAATCGATACCCCCACCAGCCAGCATCGTCAGACAGTCCAGCGGGAGCTTTGAAAAAACCATAGGGAGAAAAGATTCAGGTGGAAAGCTCTTCACTGCTCACAGTAAGACTGAGGACATTGTCCTGCCAGAGGATGAAGGCACTACAAACCTAGACTCGACACAAAGCAGCCAACAGCAGAGGGCCAAAGGTTTTGCAGAGCGCAGCTGCAGTTTCAGCGCGGAGAGTCGAGCTGGCATGTTGCGAAAGAAGAGCAGTCTGGAGTTGAGTGTGGACCACATGGGTGCAGACGCAAAAATCCTCGCTGCTGCGTTTTCCGGTGGCAAGACTCCTCCTCCTGCTTCAACCTCAGTTTCTGTCTTTAGTGACCTAGGGATGGTACCTGTTGCAAGCTCTAGCCTTGAGGAGGAGGTTAATGAGAAGATGGAGTTGATCAGTTTTGAAGTGAAGATGGATGAAGACaagggaaaaatagaaaagcCAGCTGAGGAAGTAATGCCTAAGGGGAGCACTGAAGGAGTGGGGAGAATTGTGAGCAGCTCATCATCCTCCTCTAAGGCGGTGGAGAGAGAGGATGTAGAAATAGGGGCAGATCCTCTTTCCTTGCTGGCCTCAGAAAGCGAAGAAGCAGCCTCCATTCAGAGCCAAGAATCTGCACGCCTTGTCCCACCCGTGGTCTCACGAAAACTTGCTGATGAGATCGAGATGTACATGAACCTGAAGAGCCCATTAGGAGCCAAGGCCTCCAGCATGGAACTGCACCAGGAGGCCCAGAGTAAAGGTGATCCTGTGGACTGTCCTGCCAGTAAGCAGTCTTTGGGACGGAGGTCTAGCCTCCCTGCAGGCCCAGTAAAGACCCCTGATTTACTGGAAACCCCTAAACGCAGCCCTGCTGTCACACGCTCCAAGACCTTTGCAATTAAGTCCCTGAAGACCCCTAGCAATGAGGGCCAAAGGTCATCGTCTCTGACTGCACTAGTGAGGTCTTCGCAGAGCGGATCATTAGGCTCGGTCATCAACTCCATCTCGGGCATCAAGATGGACGCCTTGCTTTCAGGACCTAAAGTGGACATGCTGAAGTCAGGCATGAAGCAAGCAGCAAACGTAGCCAGTAAAGTGTGGGGGGCCGTGGCTTCTGCCTACTCCTATTCAGACGATGAGGAGGAGCAGAGCCAGCCTAGGGACAGCTTCCCTGCTCGACTGGAGGAGCAGCTGATGTGTGGCGATGGAACAGACAGTGCTATGCCCAGAGGACTCATGCCCAGCCTGGCCTCCAATGGCCTCACACACAGCACCACCAGTCTGGgcagcagcagtgagagcagtgATACTGGCCGGGCACAGCACACTGCATCCATGACTCTTGGTAGGTCCATGAAGGGAGTGGACTCAGAGAGGTCTGAGCAGGGCTCCTCTCATCATGCCAGCACTTCCAGCATCTATCAGAACTGTGCTTTAGAGGTGCTAATGTCGAGCTGTTCTCAGTGTCGCTCCTGTGAGGTGCTGGTGTACGATGAGGAGATCATGGCAGGTTGGACAGCGGAAGACTCCAACTTGAACACAACGTGTCCTTTCTGCCACAGTTCCTTCCTGCCTCTGCTGCATGTGGAGTTCCACGACCTGCGCCCTCTGTCTGGATTCTATGTGACCAGCACCTCAGGAGACAGTATCCACAGTGGCAGCACACAGCCTACAGCCTCCAGCTCAGAGGTAAAGGTGGGCAGCCCCAGTGACGCCGCTGACCTCATCAACTTCTCAGAATCCCCTGAAAGCAaggaggagactgaagggacaCTGACCTACGGGACTGGCACACAGAAAGCACTAGTGCCAGAGCCAGTGATTTCGGACCCTCTGGGCCTGCTGGAGAGGCAGGCAGAGAAGCGCAGCACATCTCTGACTCGCAGTAACAGTGTGGGCGGGCCTCTACAGAGCCTGGACTCCATCCAGCGGCCCAATCACGGAGTGTCCACCACCAGCCTGCCCAATAGCCTGCAGGAAGTGGTGGATACATTGGGTCAGAAGCGTCCCAACCCAAATCCAGTCTCAGTGCCTTATCTGAGCCCTCTGGTGTTGAGGAAAGAGCTGGAGTCCTTACTAGAAAATGAGGGAGATGAGGTTATCTACACTCAAAAGTTCCTCACCCAGCACCCTATCATCTTCTGGAACCTGGTGTGGTATTTCCGCCGGCTGGACCTGCCCAGCATTCTGCCTGGACTCATACTGACCTCTGAACACTGCAACAATGGAGTACAGCTGCCTCAGACATCCCTGCCTCAAGACAGTAAGCAAGTATATGTGCAGTTGCTGTGGGACAACGTGAACCTCCACCAGGAGCCCACTGAGCCTCTCTACCAGCTCTGGAGGACCTTCTTGAGGAAGAAGGGCTCTTTGGCTCCCACTGACCACCAGGAGATACGGACCCTCCTCAACAGCATTGTTAGGAACATCCAGACCAATGATGTCTACGGCCCCATAAACCTGCTCCTCAGGGAGATCAAGCGACACCCGGAGGTCAAACGGCAGAGGAGTATATACAGACAGATTTTGTTCCTTTCACTCGTGGCCTTGGGAAGGGAGAACATTGATGTTGAGGCTTATGACCGGGAGTATCAGCTAGCCTTTGAAAAGCTGAGCCCAGAGCAACTGAAAGTGCTCTCTCCTATTGACCGGCCACCCTCTAACAGCGTGCAGTGGTGCCTCAAGTTCTTTGGAGCTCCATTCATCTGACCTGGCTATAATGGGAAATCTCATTTTCCACCAGGTGTCAAGAGCTCAGACATGTGGGGCGTATAGAAGTGCACCCAGTCATCATAATGAGGAACTTACTGACCGGCTCTTGTACTGTCCTCTTGCTTGCGCTGTTACCCAAACATGGTACTTTATCATCCTCCAGCGCCAGGATCAAAGCTTGCTTATTACAGTGTTTGGCAACACCAGTATGTTGTATATGGATATTTATTGGTGTAAATCTTCAACTGTCTTGATACTAGCACCTGTTTATTTCCTTGGACCAGTGGGAGTAAAGAGGATGGAAAAGTGCTCAGTCCCATATCACTGCCTTGCATCCCAGTAGTGTCCATCCAAACCTACCTGTGGAAGGAGTCCAGTGGAAGTGAAGATATGTTTTCTTGAGACCAATGGCAATGGTCTTAGATAATGTGCACTttcaaatttgattttttttttctatttccattgtttgtatatattttttctaagaTGGGATATTCGAACTTGACTGCCTTTTACAAAGGGATCTTGACCTATTTCTATGGAGTCAGTCTTAAATGCCAAGCCTATATTATTGATGTGGGTCTTGAGTGTTGCAGTGGAAggattaaagtgtgtgtatgtgcatgtgcgtacatagctgtgtgtgtgtgcagttgtatAAATTGGCTCATCATTCGTTAGGAAGACTGTGGCAGCAGACAATCAGATTTTGTCATGAACAAGGTAGCATTGTATTGAGATCAGGTTCAGTAATAGATAGTAAAGAACTTTTACTGGAAGTTAGCTTTTATGCACCTTTGGACCTTACATGTAAATTTAAAGATACTTATGTTGTAGAGGAAAGTAATGAATGCGTTGGGAGTATAACtactgaaaagaaagaattatcctttattttattcagacaTTCTTGTCTTGAATAAAGTCATGAtattttggaggaaaaaaaatcagaatccCTTTACATGTACATGTGCTTGAACAGTCCAGTTGAACTATAGTATGAATGTACAATATCTCtcaaatatcaatatttttatctgtttttaattaacattttatgcTATTGTTCAATacaaatgcattttcattttcagtagagTCTCAAGTCTTAAACTCCACGTTGCTTATATCACTCAGTCAAAGTGACCTCAGTAGGCAACAATAATTAGTCCTCTAAAGAAAGATGATCAGCAAATCTCAGTAGTTCTAGTGCCTTTTTATTTAGAGAAGGTAGGTTTTACTACTAATAAATTAACATAGAGTGCAATCAGTCTGccttaatttatttatccttATCTTTTCATATccttttattgtgtaattatttgAAAGCTCATGTGAAGACAAACATTGTTCCATGTTTTTTATCCTTGTAATATAATACAGGATTGTTTGAGGCAAGTTTGAAAATATTACATAGAGCCATGCAGTGATGCATATGTATAAAGCGGAATTGTTAGTAATCCAATAACCACTGTTCCTAGCAACAAAAATCTGAGTATAACAAATGTAAATTAGTAATATTTTTCCCATGAGAAATTGATATTTTGGTAGTGGGGTTTTGTAGTATTCAAATGAAAGCTTGAGAAACAATCATTTTAAGGCTCATTGTTGCAAGAATGTAAGAATGAAAAGGCAGTATGTGTGGACCGCTTTGATTTGAATGTATTGAATGTATTCTTGAAAGCATATGGGACAGTGAGGACATGGTTTCTGTTATATTGTTTACACATTTGTAACATTGTAAGCAAACTGATCATAGATTAATCCCAGTGTTGatgtgaaatatgaatgtaaCACATTTTACTCACTGTAGTCAGAGCTGACCTGAGATCCAACACTGTGTAATCCTGCATCCTGAATATGGCCATAAGTGTAGATGAGACTGATCCAGGATCAGCACATATCAAACCAACTACATGAGGATTCAAGTCAGCTTATCATGTTATGATTACGTGATCTACCCGTCCTAAATCCACAATATAACATTCCAACAGCAAAGATTTCCCCATTTGGGGTTCATTGTAATATATCACAGTGTATACTATTTGCTAATGATGGAagaaccaaccaaccaacctaTTTATGGACAGACTTGTACTTTACGTAGCTGATTTACATTGCTTCATTTACTGCAGTTAATATTTTAGCTCCTCGCTGTTCCTACTTGTTCAGTCTATCTGATTATGTACACAAATTGCAAAACTGATACTCTTCTGTCAAACATATCCTGGTGGAGTTATATTAAAGAAAATGCATAAGGATCATGTCTGCATCAAAAAGTGTATGGGTGAATATGGCATACAAAGACTACCATATGAtcctgaaaggaaaaaaaaaaaaaagatccaggATCTCCTACATGATGCACAGGTAGTATGTCTGGTCCGTAGGTCTGTTCTGTCCATACGTTGACTTATCTACCGTCTAGTGTCCTGTGAAATGGGTATGAGTTTGTACAGCATTATGTTGTTCTCCAATAAACATGCTTTGTCGTAAGttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79437 lncRNA downstream 16915 18947318 ~ 18947539 (-) True G67016
XR_003403990.2 lncRNA downstream 449736 18499351 ~ 18514718 (-) True LOC113539972
XR_003403989.2 lncRNA downstream 449736 18501531 ~ 18514718 (-) False LOC113539972
TU79023 lncRNA downstream 577464 18386561 ~ 18386990 (-) True G66651
TU78732 lncRNA downstream 943645 18015144 ~ 18020809 (-) True G66387
TU79924 lncRNA upstream 314044 19328348 ~ 19340529 (-) True G67454
TU79923 lncRNA upstream 318770 19333074 ~ 19339158 (-) True G67453
TU80028 lncRNA upstream 591188 19605492 ~ 19656442 (-) True G67527
TU80030 lncRNA upstream 602144 19616448 ~ 19629949 (-) True G67528
TU80038 lncRNA upstream 755053 19769357 ~ 19824919 (-) True G67535
XM_034303647.1 mRNA downstream 705 18954712 ~ 18963749 (-) False acer2
XM_026936644.2 mRNA downstream 946 18954712 ~ 18963508 (-) True acer2
XM_034303867.1 mRNA downstream 16689 18943964 ~ 18947765 (-) False LOC113540271
XM_034303868.1 mRNA downstream 16690 18943964 ~ 18947764 (-) False LOC113540271
XM_034303866.1 mRNA downstream 16690 18943964 ~ 18947764 (-) True LOC113540271
XM_034303840.1 mRNA upstream 1052 19015356 ~ 19023907 (-) True haus6
XM_026935905.2 mRNA upstream 10829 19025133 ~ 19028898 (-) True plin2
XM_026935902.2 mRNA upstream 20188 19034492 ~ 19042269 (-) True larp7
XM_026937056.2 mRNA upstream 30518 19044822 ~ 19049448 (-) True LOC113540506
XM_034303508.1 mRNA upstream 31655 19045959 ~ 19049448 (-) False LOC113540506
XR_003404075.1 other downstream 1048683 17915630 ~ 17915771 (-) True LOC113540701
TU78662 other downstream 1134328 17792226 ~ 17830126 (-) False map11
trnas-uga other downstream 1193223 17771150 ~ 17771231 (-) True trnas-uga
TU78578 other downstream 1329586 17594449 ~ 17634868 (-) True G66281
TU78241 other downstream 1520280 17439493 ~ 17444174 (-) False rnaseka
XR_003404117.1 other upstream 2519 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 2966 19017270 ~ 19017400 (-) True LOC113540750
XR_004578062.1 other upstream 39403 19053707 ~ 19155217 (-) False LOC113540242
XR_003404109.2 other upstream 208435 19222739 ~ 19222843 (-) True LOC113540739
TU80099 other upstream 873875 19888179 ~ 19888726 (-) True G67587

Expression Profile