RNA id: XM_034303440.1


Basic Information

Item Value
RNA id XM_034303440.1
length 1911
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC113540482
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29596466 ~ 29602830 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTCATCATCTAATCTCTGACCAACCGCAAtctgatcttaaaaaaaaaaaaagaggaatcaTTTAATGGTGATTGCAGCTGATCATCCTTGACTGCTGAAATAAGAGTGGTTCTATTTGCAGTCCTTTATACACACAGATCCTGAATCTTCTCCCATGTTGTGACCAAAGAAGTGTCTCGTTTTTATCGACTTCTTCCTTCAAACTGTAAGCCTTCGTCCTATGGAGGGCTCTTTGGCTGgacacactacacactcgcACAGGAGAACCTCATCCCTGGGTAGTCTTTCAGATCATGCCAGTGAAGAGAACGGGATGAGAACCAGCACAGACGAGTGGCATGATAGACCACCTGTACCAACCTTACTAGGTTATGAAGTCATGGAGGAAAGGGCAAAGTTTACAGTCTACAAGATCTTGGTGAGGAGAGCACCCGATGAGAGCTGGGTGATTTTTCGGCGCTACACGGATTTCTCCAGACTCAACGACAAGCTCAAAGAATTGTTTCCCAAATTCAGACTCTCTCTGCCTCCCAAGCGTCGCTTTAAAGACAACTACGACATGAACTTCCTGGAGGAGAGACAAGTGGGCTTGCAGGCCTTCCTCCAGAATCTGGTCGCTCAAAAAGACATGACTAACTGTGATGTAGTGAGAGGGTTCCTGTGCTTGGACGATCCACCCGGTCCCTTCGATAGTCTGGAAGAGAGCAAGGCCTACTGCGAGACCCTGGAGGAGACGAACCATCGGCTGCAGAGGGAGCTGCAGGATAAGCAGCGAGAAATCCAGTCTCTTAGAAGAATCTTGGAGGATCGAGAGCTCCAAATCAGCGGGCTGGAGAAAACCAAGAACAGCATCTGTGACGAGTTAAGTGAAGTCCACGCAGTGTGTAGTGAGACCGTGAAGGTAGACGCTCACACAGAGCCGGAAATTGAAGCAGCAAGGACAGACGACGCAAGCGACCCAGACCACAGTTTGGACCCCCAGTTGGCAAAGAGAAGCCATGCAGCTTACTGGAGCGGTTCGGCGTCAGAAGACAGCGAATGTGTGAGCTTCACCAGATCAACATATCTCAAGGACCAGGCTTAGAACTTCCATCGTCTGCATTCTGGAAAGATATATTTGGATTCTTGGAAATTAGTTTGAAAGATCAACGGATCTAAACACCTGGAGCTAAAATGATCTCTGGTGATATTTACAAGCCACgactgtttttttctcagcagAAATATGTTGGAGTGGTCCGAACAGCTGGGCTGAGAAAGATCTGAACTATTTACAAGGTGAGAAGTGAAGGCATCTTAGATGTTACAGAATGCAGATTCTGCGCAGTGCCTTTTTATCTCTGAAATCGccaaacagcacatttttagaAGTGTACATCTGGAGTGGACATTAAGAAgtctgttttattatattttctcgAGGGCTTGACTATATTTGGAGTGCTTTtgagtgtacgtgtgtgtgttcgtgtgtgtgtttgagtctgtgTGCTTATTAATCTATTGCTATTAAGGTGTAGATTAATGCGCTTGCTGTAATACAtgatcgtttccatagtaataACTCATTCAGGGAATAAATAGATTTTcaatgctgttatttaacaaagaacaataTGTGCAATCATTAATATAgcaaaattttctgtaaggagatgtatattcaacatttatggaaggagtctccagtgtcagtgcattgtaacAGTCGGTGCGTTTTCCGCTACGGGACTTTgctctttccagtttctctgaaaCATCACCAACTCCATCTTTTGTCTcattcaaaagagagaaaaaagagagactgctGAGCAAATgtcagtttatagctgctacaacataagCGATGACAGGAACTCATTTGTTTCGCAGATGtcccataacattaaatgtaactataaatctT

Function

GO: NA

KEGG:

id description
K17928 SNX16; sorting nexin-16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86653 lncRNA upstream 55031 29541095 ~ 29541435 (+) True G73092
TU86650 lncRNA upstream 69548 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 71630 29524298 ~ 29524836 (+) True G73088
TU86633 lncRNA upstream 72224 29483262 ~ 29524242 (+) True G73072
TU86683 lncRNA downstream 26763 29629593 ~ 29629823 (+) True G73118
TU86686 lncRNA downstream 70684 29673514 ~ 29681141 (+) False zgc:153115
TU86717 lncRNA downstream 109640 29712470 ~ 29712682 (+) True G73151
TU86720 lncRNA downstream 115632 29718462 ~ 29719317 (+) True G73154
TU86688 lncRNA downstream 119236 29722066 ~ 29723750 (+) True G73123
XM_034303451.1 mRNA upstream 37341 29554015 ~ 29559125 (+) True LOC113540073
XM_026936268.2 mRNA upstream 37341 29554136 ~ 29559125 (+) False LOC113540073
XM_026936269.2 mRNA upstream 37341 29554145 ~ 29559125 (+) False LOC113540073
XM_026936004.2 mRNA upstream 42919 29541983 ~ 29553547 (+) True ccdc39
XM_034303967.1 mRNA upstream 56451 29534634 ~ 29540015 (+) True dcun1d1
XM_034304047.1 mRNA downstream 17281 29620111 ~ 29623797 (+) True asip2b
XM_026935837.2 mRNA downstream 70875 29673705 ~ 29681175 (+) True zgc:153115
XM_034303651.1 mRNA downstream 101658 29704488 ~ 29720768 (+) True rc3h1b
XM_026935987.2 mRNA downstream 149241 29752071 ~ 29760972 (+) True LOC113539887
XM_026935838.2 mRNA downstream 364841 29967671 ~ 29976291 (+) True rgs18
TU86406 other upstream 684362 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1975083 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1975789 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2038564 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 2039818 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 17163 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1143301 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1143301 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1458900 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1748431 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile