RNA id: XM_034303458.1


Basic Information

Item Value
RNA id XM_034303458.1
length 2597
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC117597000
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6837479 ~ 6868065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGGGCTCGCGCTAACTGAGCGGCGTGGGTGAAGTCACCGCTATTGTGACGTCACAACGGCTGGCACCTGAGCGCGCGCGTTCTATAGAACACCTGGACGACATTTTTACCTCAGTGCAGAAAAAGGAAACACGAGCAAagagacatttttcaaattcagACTTTGTTTCCTCAgataaatcattttcttttattgtgaAGGAGTTCAGTGAAAAATCAGAATGCTCTGCTGCCCCTGTTTTTGGTCGCAGAAGAGCAAGGTGCATCCTTCAGTACCTGTGACACCTGCAGAAAGCGgctcaaaaacacaaacagagacacCTGGAACTAGTGAGAAATctacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAAGAAGAACAAGGTGCATCCTTCTGTACCTGTGACCCCTACAGAAAGCGGCTCAAAAAGACCAACAGAGACGCCTGGATCTAGTGAGAAATccacagagaagaagaaggatggTGCAAGGAGAACATCAAAATGGTGTTTCTGGAGGAAGAAGAACAAGGTGCAACCTGCATCATTTACAGAAAGCAGCTCAGAAACTCCAAAAGAGACTCTGCAAAATGTCTTTCTGAAACTATTAGCGGGGGCCATGCCAGGGCAACTctcaaaaacaaagaagaagacCTCGACTAGCCGCAGTGAGAAAAGTGCAGAAAGGAAGCAGGTAAGTGTGAAGCCAGCCTCCAAACTCCCAGGGAAAAAATGCATACAGGGCAAAGAGGCCGGTGTGAAGATAAATTTACCAAGCTCGATGAGGATCACTGCGACgaaggaggaaaggaagaagACAACACAGTATGGGCAAGAAAAGAAGCCTACAGAAAGGAAGGAGATGACCTCAAATAGGCTTAatatgaaaaaagcaaaaacgaAGCAGGTCAGTGTGAGGCCGACCTCAAAACTCCCAGGGACGAAACGCTTAGAGGTCAAAGAGGCCCATGTGAGGACCACTGCgatgaggaaagaaaaggaggaaaagaggacGACAACCCTGCATGGCCAAGAAAAGAAGACTGCAGAAAGGAAGGAGACGACCTCAAATAGGCCTAATATGAAAACATCCGAAACAAAGCCGGTCATTGTGAGTCCTATCTCAAAACACCCATGGACGAAACGCATAGAGGTCAAAGAGGCCCATGTGAGGACAAATTTACAAAGCTCAGCGGGGACCACTGCaatgaggaaagaaaaggaggaaaggaaggagATGACCCTGCGTGGCCAAGACaggaaggaggaaaagaaagaaatgatccTATTCAAGTCGGAGGATGAAATGGCAAAGTTGATGGAGGTACTGATGGAGTTGGCCTTTTCTTCTTACATGGAATACAAGAAAAGGGTGAGAGATCCACATGCATTCAGTTCCAAAAAGATGATCCCTGAGGGAAACATAAAGAGCCCGATTCCGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCGACTCCTTCTGAGGAAAACATAAAGAGCCCGATTCCAACTCCGTCTGAGGGAAACATGAAGAGCCCGATTCTGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCGACTCCGTCTGAGGGAAACATAAACAGCACGACTCTGACTCTGCCCCCCATCACAGACAAGCAAGAGCTCACTGGCGGGTTGCCTAATTTTGGAAACAACTGCTACGTTAACGCAAGTCTGCAGTGTCTGTTCACAGCTGAGTCTTTTTGCGGAGAGCTCTCCTACCTGCTGGACAATTCTGTCCACAAACTAGAGGACACATTCCTCAGATGTTTTGTGGAGTTGTCGAGGTTGAGAAAGAGCTCTGAAGTTCAAGGTGACATCAGCAAGGATTCTCTCCTCCTGGCCCTGATTGAATCAGCTACAGACATCAATCCAGAATTCACCATCAGTCAACAGAACgacgCCCATGAATTCCTCTGCCACTGTCTGACCCAAATGGAGGAGTCTGGGCGATGGCTGGGTTGGCAAGAGGATGTGGACCCTAGATGCCCAGTCAGGGCCAATTTCAAGTTCAAGATGAGGAACATTATAACATGCTCCAGCTGTGGATCCCAGCAGAACAACAAAGTGGAAGTGTTTAATCACATCTCTCTGCCCCTGGTGCACAACTCAGTGGACCAGTGCCTCTATGACATAGTTAATAACCCCACAGAGTTAGAGAGCAAATGCAAGGTGTGTGGAGGAGAATGTGCCAAGTCCAGGTGGATGTTCCACACTCTGCCCAGgTTTCTGATTCTGCAGCTGAACAGGTTCAAAGTGACTGAATATTACACAGTCGTCAAGCTGCATATGCCAGTGGAGATCAAACCTGAGCTGCAGATAAACTGCCATCCTGAATCAGATTCGCCCAGAATAGGGTGGATCAGCTGCCACGTATCGACTGATCAGTGTCCTCAGCCATGTTGGAAGCACAACATTATGTGGACATTATCTGAGTGATTGTTCCAGTTCCAGTCACCAGTGGATGACCTACAATGACCAGCGGGTCACTCTGACCACCGAGACGGACGTGTTAAAGATGAGGTCGACTAGCGCCTATGTGCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71799 lncRNA downstream 44600 6785327 ~ 6792952 (-) True G60672
TU71581 lncRNA downstream 195367 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 235326 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA downstream 235326 6588011 ~ 6602226 (-) True LOC113547257
TU71370 lncRNA downstream 442481 6394865 ~ 6395071 (-) True G60333
TU71790 lncRNA upstream 34147 6878644 ~ 6881335 (-) True G60669
TU71867 lncRNA upstream 386157 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 397628 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 596765 7441262 ~ 7538818 (-) True G60846
TU72015 lncRNA upstream 638624 7483121 ~ 7483703 (-) True G60852
XM_034303462.1 mRNA downstream 25120 6810129 ~ 6812432 (-) True LOC117597003
XM_034303608.1 mRNA downstream 39066 6795085 ~ 6798486 (-) True LOC117597067
XM_034303607.1 mRNA downstream 47737 6779995 ~ 6789815 (-) True LOC117597066
XM_034303606.1 mRNA downstream 57564 6778356 ~ 6779988 (-) True LOC117597065
XM_034304050.1 mRNA downstream 59512 6775979 ~ 6778040 (-) True LOC117597185
XM_034303459.1 mRNA upstream 5277 6849774 ~ 6854214 (-) True LOC117597001
XM_034303460.1 mRNA upstream 5885 6850382 ~ 6854214 (-) False LOC117597001
XM_034303609.1 mRNA upstream 24873 6869370 ~ 6912573 (-) True LOC117597068
XM_034303461.1 mRNA upstream 36885 6881382 ~ 6883403 (-) True LOC117597002
XM_034303444.1 mRNA upstream 112275 6956772 ~ 6959079 (-) True LOC113526837
trnae-cuc_12 other downstream 393737 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 656593 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 878007 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 907353 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1351755 5478542 ~ 5485797 (-) False cldn1
TU71817 other upstream 37972 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 1731009 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2138737 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2470352 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2493329 9337826 ~ 9338745 (-) True G61537

Expression Profile