RNA id: XM_034303460.1


Basic Information

Item Value
RNA id XM_034303460.1
length 1478
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC117597001
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6849774 ~ 6854214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAATAGGCCTAATATGAAAACATCCGAAACAAAGCCGGTCATTGTCAGTCCTATCTCAAAACACCCATGGACGAAACGCATAGAGGTCAAAGAGGCCCATGTGAGGACAAATTTACAAAGCTCAGCGGGGACCACTGCaatgaggaaagaaaaggaggaaaggaaggagATGACCCTGCGTGGCCAAGACaggaaggaggaaaagaaagaaatgatccTATTCAAGTCGGAGGATGAAATGGAAAAGTTGATGGAGGTACTGATGGAGTTGGCCTTTTCTTCTTACATGGAATACAAGAAAAGGGTGAGAGATCCACATGCATTCAGTTCCAAAAAGATGATCCCTGAGGGAAACATAAAGAGCCCGATTCCGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCAACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCTGACTCCGTCTGAGGGAAACGTAAAGAGCCCGATTCCGACTCCGTCTGAGGGAAACATAAACAGCacgactctgactctgactctgccCCCCATCACAGACAAGCAAGAGCTCACTGGCGGGTTGCCTAATTTTGGAAACAACTGCTACGTTAACGCAAGTCTGCAGTGTCTGTTCACAGCTGAGTCTTTTTGCGGAGAGCTCTCCTACCTGCTGGACAATTCTGTCCACAAACTAGAGGACACATTCCTCAGATGTTTTGTGGAGTTGTCGAGGTTGAGAAAGAGCTCTGAAGTTCAAGGTGACATCAGCAAGGATTCTCTCCTCCTGGCCCTGATTGAATCAGCTACAGACATCAATCCAGAATTCACCATCAGTCAACAGAACgacgCCCATGAATTCCTCTGCCACTGTCTGACCCAAATGGAGGAGTCTGGGCGATGGCTGGGTTGGCAAGAGGATGTGGACCCTAGATGCCCAGTCAGGGCCAATTTCAAGTTCAAGATGAGGAACATTATAACATGCTCCAGCTGTGGATCCCAGCAGAACAAAGTGGAAGTGTTTAATCACATCTCTCTGCCCCTGGTGCACAACTCAGTGGACCAGTGCCTCTATGACATAGTTAATAACCCCACAGAGTTAGAGAGCAAATGCAAGGTGTGTGGAGGAGAATGTGCCAAGTCCAGGTGGATGTTCCACACTCTGCCCAGgTTTCTGATTCTGCAGCTGAACAGGTTCAAAGTGACTGAATATTACACAGTCGTCAAGCTGCATATGCCAGTGGAGATCAAACCTGAGCTGCAGATAAACTGTCATCCTGAATCCGATACGCCCGGAATAGGGTGGATCAGCTGCCACGTATCGACTGATCAGTGTCCTCAGCCATGTTGGAAGCACAACATTATGTGGACATTATCTGAGTGATTGTTCCAGTTCCAGTCACCAGTGGATGACCTACAATGACCAGCGGGTCACTCTGACCACCGAGACGGACGTGTTAAAGATGAGGTCGACTAGCGCCTATGTGCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71799 lncRNA downstream 57430 6785327 ~ 6792952 (-) True G60672
TU71581 lncRNA downstream 208197 6641971 ~ 6642185 (-) True G60503
XR_004578003.1 lncRNA downstream 248156 6587543 ~ 6602226 (-) False LOC113547257
XR_004578002.1 lncRNA downstream 248156 6588011 ~ 6602226 (-) True LOC113547257
TU71370 lncRNA downstream 455311 6394865 ~ 6395071 (-) True G60333
TU71790 lncRNA upstream 24430 6878644 ~ 6881335 (-) True G60669
TU71867 lncRNA upstream 376440 7230654 ~ 7230904 (-) True G60727
TU71866 lncRNA upstream 387911 7242125 ~ 7246436 (-) True G60726
TU72009 lncRNA upstream 587048 7441262 ~ 7538818 (-) True G60846
TU72015 lncRNA upstream 628907 7483121 ~ 7483703 (-) True G60852
XM_034303456.1 mRNA downstream 1541 6837479 ~ 6848841 (-) False LOC117597000
XM_034303454.1 mRNA downstream 1541 6837479 ~ 6848841 (-) False LOC117597000
XM_034303455.1 mRNA downstream 5885 6837479 ~ 6844497 (-) False LOC117597000
XM_034303453.1 mRNA downstream 5885 6837479 ~ 6844497 (-) False LOC117597000
XM_034303458.1 mRNA downstream 5885 6837552 ~ 6844497 (-) False LOC117597000
XM_034303609.1 mRNA upstream 15156 6869370 ~ 6912573 (-) True LOC117597068
XM_034303461.1 mRNA upstream 27168 6881382 ~ 6883403 (-) True LOC117597002
XM_034303444.1 mRNA upstream 102558 6956772 ~ 6959079 (-) True LOC113526837
XM_026914411.2 mRNA upstream 135066 6989280 ~ 6995460 (-) True LOC113526956
XM_026914102.2 mRNA upstream 160814 7015028 ~ 7018277 (-) True exosc4
trnae-cuc_12 other downstream 406567 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 669423 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 890837 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 920183 5900249 ~ 5930199 (-) True G60166
TU70820 other downstream 1364585 5478542 ~ 5485797 (-) False cldn1
TU71817 other upstream 28255 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 1721292 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 2129020 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 2460635 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 2483612 9337826 ~ 9338745 (-) True G61537

Expression Profile