RNA id: XM_034303464.1


Basic Information

Item Value
RNA id XM_034303464.1
length 1487
RNA type mRNA
GC content 0.45
exon number 4
gene id msantd1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20374263 ~ 20377870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGGCTGGTTGTTGCCAGGGCAACTTGACATCACAGTGACGAACTTCCCTCTTTAAAAGCTTTTAAAGCTGATTGCTCCAGCCCTCCAGGCCCCATTCTGATGCCTCTTAACTGAGTTAGAGGGGGGAAGGGCAGAACGGGTGGCCTCTCTCACACATAATCAGAAGCCTGAGGAAAGAACAGAAAGGAAAGGGAAAAGGTGGCTTTCTAAAAGCTCGCTGCAGTGAAACAAAACCTTCCAGGATTCTGTTTGTACAAAaatctgaaagagagagagagagagataggtgCTTTACAAAATGTCCGCTGAGGACTGCTTCAGTTATATAGTGCCAAATGAGAAGCACAGAAGAGCAGTCAATTGGACAGATTCAGAAATGAAAGGGCTTCTGTACATCTGGGAAGAGTACGTCACTGAGCTCAAGAAGGCCAAACGCAATGCTAAGATCTACGAAATGATGGCTAAGCGACTGTATGACCTGACCGGCGAACACCGTCACAGGGAGGAGATAAAGATGAAAATCACCAACATGACATTCCAGTACAGGAAGCTGAAGCACACAGCCAGTGGTGGTGGAGGCACACCTGACTGGCCATATTACAAGTCCATTGAGAGGATTTTGTCCAAGATTCCAGAGCAGACCCATATGAGCCCACTGGACCCTCAAATCACTGGAGCATCCACTTCACAACCTGAACCCTCTGTACCCCAAGCCGGGACGCCAGTCATCGGCTTTCTACCTGAGTACACTGGATCCTCAGAGGAAAGGGAGGtcaaagaggaggaggatgacgGCACAGACGTCTCTGTGAGTTCCTTTGAGTCCAGgtCTCAGCCTATGAAGAGGCAGCGATTGTCACACAGTACATCACTGCGCCGCAGGAAGTTGCGTGTGATGGAAGCGATGCTGAAAGAGCAGAGGAAGATGAGCCGTGCTGTGGAGGACACATGCCGAGAGGTACGACGTGTAATGCACCAGCAAAACTTCCTGCAGGTACAAAGCCTGCAGCTCCAGGAGCGAATGATGAACTTGCTGGAGAAGATGATCCCATCCACAACCCaccttacaaacacacatacctGAGTGTGACCTAGCCAGCATTTATGTGCTCCTCATAAACTGGTATTCACAGCTTCACAATGTTTTTTGTGCTTCAGCAGTGAAGCTATTGAAATACATAGTTCTGTTTAATTtgcaattgttttattttacagcaattGCAGAAGGTGGACTATCACAAAGCTGCTATAGCCAGTGATCTCACATCTCACTAACTTGATGACTCAGAGTTTGGAAGTGTATTGAGTTTGCAGCTGTACAAAACTCAGAATCACAATATACGGTGTCTTACATGAAAAGAACACAACACTaattgaaataaacacacagtactTGTTTACTATTTTATCTTTGGTACTACATTGTTTAAGTATTGTTAAAGGATTTCAGATGTTTCTTTATGATGCTATACATAATGATCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80393 lncRNA upstream 98588 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 307098 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 307225 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 408375 19962599 ~ 19965888 (+) True G67642
TU80554 lncRNA downstream 102730 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 257478 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 314393 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 314393 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 487008 20864878 ~ 20895955 (+) True G68192
XM_034304049.1 mRNA upstream 1887 20352720 ~ 20372376 (+) True dtx4a
XM_034304048.1 mRNA upstream 1887 20353412 ~ 20372376 (+) False dtx4a
XM_026935887.2 mRNA upstream 22386 20349428 ~ 20351877 (+) False si:ch211-119e14.1
XM_026935884.2 mRNA upstream 22386 20349429 ~ 20351877 (+) True si:ch211-119e14.1
XM_026937181.2 mRNA upstream 28582 20333678 ~ 20345681 (+) False coro1b
XM_026936845.2 mRNA downstream 905 20378775 ~ 20411656 (+) True rgs12a
XM_026936848.2 mRNA downstream 905 20378775 ~ 20411656 (+) False rgs12a
XM_026936846.2 mRNA downstream 905 20378775 ~ 20411656 (+) False rgs12a
XM_034303900.1 mRNA downstream 953 20378823 ~ 20411656 (+) False rgs12a
XM_026936850.2 mRNA downstream 8896 20386766 ~ 20411656 (+) False rgs12a
trnaa-cgc other upstream 21778 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 219492 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 273165 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 545373 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 545881 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 642388 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 949476 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1251206 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1251206 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1374546 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile