RNA id: XM_034303466.1


Basic Information

Item Value
RNA id XM_034303466.1
length 1757
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC117597006
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16197701 ~ 16204202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGAGACAGATCTGACAATAACTGATCTGACAGTAACTGATCTGACAGTAACTGATCTGACAATGACGGAGCAAAGAAGGTGCCACAATCCTAAAGACAGCACCCTGAGATTTGTCACTAGAGCGGATGACATTACCCTTGATGATGATCCCAATACCCAGAGATTAGAGATGTCTTGTGGCCACGCTGTCACGCCTGAATCCCTCACAGCCTACTGTCGCAGTCTTCTGGATAAGGGTGACTACAAATTCGTGTGTCCAGCTATAAAGCAGGGAACTGATACATGTGGGGCTGAGTGGCCATACATGGAAGTGCGGAGGATTGCTTTACTGACTCAAGAAGAGCAGAACCACTTTGAAGAGACAATGGCTGTATTGGCAGCAGCTAAGTACTGTGAATACAACCCAtgcccCGGTTGCAATTCATATGTTGAGAGGCAGGATTTGACCAACCTCTGTGTACTCTGCACCATCTGTACATCAGATACTGGTGAGAGGTTTGAGTTCTGCTGGCAGTGTCTGAAGACGTGGAAAGGGCCAGCACCTCGCTCAGACAAGTGTGACAACAGCAACTGTGTTAACCCAACACTTGAGAAGCTATTAAATTGTAAGGACACAACCCTTCCTGAGGTTCAAGACCTAATATGTCCCTCACTGCGAGCTTGTCCTACATGTGGAAACCTGGTAGAGCATGACACAACAGGGTGTAAGAATATAATATGTAATCGCTGCCATATTGAATTCTGCTTTTCTTGTCTGAAGATAACTGAAGATTGTCTAGAAACAAGCTCATACTTTAAACCTTGCTCAGATGGTGTAGCACCTCGGCAAACATCCATTCCAACCTGGAGAAAGTAGGTAATTGAAATCTTGGCATAATATAAACACCAAAAAGCACATTTTGTGTCTGCTTAAGTGTTTCTATGAGTATAGcttaatagtttaataatatAGGATAATACAATCTAAATGCAATATGATCAAAAGTAAAGCACAGCTGTCTTCAGGCTATATTGAAAAGTATAATATGTTTGTCTTTATTGTTATTAGTTTTATAACATAATTTTGATTATCACAGAAAAGATAGACTGAGCTTTTTAGTTCAaaaggcctcatttatcaagctgagTATGAACTgctttattcataaattgttcaTGGGGCATTTATGCAataaatttggtattcatgaagaTCCTGTAAGTTTAGAAAGTGTCTTGAAGGCTcttcatttgtaaacaatccttctggctgtagaatggtgaatttcaaattgatggagatggccttataacccttcctaGATTTATGAGCAGCAATAATTCTTCTCtcaggtcatggctgatgtcctttcttcttggcatgatgtagacacacgaGTGCTGCCAAACTGCCAAAATTTCTGATTTTATAGAGGTACTTACACTTCtcgatgattaactaatcttgtgtgtttcattagtaacacctggctgctaattactctcttaataaTTGTGGTAGTAGGAAGGGTAGTTGGTGAAAAtaactacatattgaaatttgttgtgtttttttttgtttgtttgtttgcttatagaagttggtgaggaccacacaattgttatttaggctctgataaataaaaacatagaattgaaagaGGTTGTACTTTCTTTTTAGCATGACCGTAGTTTGCTatgagttactgcacttttatatacagattatgctGTCAAGCTTCTAACCTGAAGTCGCCAAGATTctttgctttga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77172 lncRNA upstream 134240 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 142556 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 196240 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 326930 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 640777 15506292 ~ 15556924 (+) True LOC117597190
TU77337 lncRNA downstream 19216 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 187927 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 226259 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 227743 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 310435 16514637 ~ 16514841 (+) True G65542
XM_034303835.1 mRNA upstream 45264 16145424 ~ 16152437 (+) True LOC117597111
XM_026937082.2 mRNA upstream 57831 16135364 ~ 16139870 (+) True LOC113540526
XM_026936354.2 mRNA upstream 68392 16125016 ~ 16129309 (+) True casp23
XM_026936352.2 mRNA upstream 77382 16109037 ~ 16120319 (+) True slc7a7
XM_026936351.2 mRNA upstream 77382 16109038 ~ 16120319 (+) False slc7a7
XM_026936368.2 mRNA downstream 52463 16256665 ~ 16264197 (+) True tkfc
XM_026936367.2 mRNA downstream 60052 16264254 ~ 16277494 (+) True si:dkey-9k7.3
XM_034303836.1 mRNA downstream 74788 16278990 ~ 16284284 (+) True LOC113539958
XM_026936115.2 mRNA downstream 87617 16291819 ~ 16298721 (+) True ovol1a
XM_034303998.1 mRNA downstream 95739 16299941 ~ 16310157 (+) True mus81
XR_003403994.2 other upstream 157717 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1538765 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1928361 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2478247 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2635435 13558623 ~ 13562266 (+) True cited1
XR_004578074.1 other downstream 106011 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 163754 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 556317 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 556547 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 556779 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile