RNA id: XM_034303472.1


Basic Information

Item Value
RNA id XM_034303472.1
length 3089
RNA type mRNA
GC content 0.54
exon number 21
gene id dis3l2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 863378 ~ 886395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACCACAGAACTTCAACTCCCAGAATGCAACTGGGCGAGTTGACCTTTAAACCCGGAAGTacctATGGATGAGATGATGGAGTCCTCCTGTAAACCGAGCGAAGCTGCAGAGAAAAAGCAAGGCCAGAACCGGAGCAGAACTCCTAAAGCTGCTAGAACTCCTCAGCAGAACGGTCCGTCTGGGTCAGACACGGGACGCACAGAGAACCAGCCCGAACCTGACGTGAGGGCCAGGAGAGGAGACCAGAACACTACGGATTCAGAAAATCACCACACTGATACGGCTAAACGGCGACGCCATAAACAACGCAGGAACAAGCAGGCTTCTGGAGGAGCAGAGACAGGAACTGCTAAACATCTAACACACACGGCTCCAAACCagcaagagaaaaaacacaaacacggACACGTGAACACAAACACGGACACGGGCACACCCCCGCTCATCGACGACTCCACGACTCCcgatgatggaggaggagagaagcagaagaagaagaagaagaagcagaagaaatcCAAAGGGAACACAGAAGATAAATCGGTGAAACCGTGTGAGTCTGGAGCTGTGGAGAAACCCAAAACtccactgaaaaacacaaaaactcaaGctgtgagtaTGAGCCCGAGCCCAGcgggacagatggacagagagaacaGTCGGAGGaacagagggaggaagagaCGCCTGTATGAGGACTACATGTCCATTAAAGACGTATCTGATGGACTGAAGAGAGGACAGCTcatacagGGTGCATTGAGGATAAACCCAAGGAAATATCACGAAGCGTTCATTCCCTCTCCTGACGGGTCGGCGGACATTTTCCTGGACGGGATGGTGGCACGGAATCGAGCTCTGAATGGAGACGTGGTGGTGGTGAAGCTCCTCCCTGCAGATCAGTGGAAGGTGTTGAACGGGGACGAGAGCGAACAGACGAGTGTGGAGAAAGAGCGACAGAGCGAGTCTGTCCCTGACGTCACAGTAGAGGCTCAGTAtggtgaggatgaggaggaggaggaggacgaagAGCTCAGTAAGAAAATGGAGGCGGCCACTCTTCAggataaagttCGACCCACAGCAGATACTCTCAGCGCCTCAGACAGAAAAGTTCAGCGCACCGCCAAGGTGGTGTACATCGTGGAGCAGAAGCACTCGAGGGCAGTGTCAGGGTTTATTAAGCTCATCCCTGACAAGCCCTTCGCCCTGTTCTCCCCCTCGGACCACCGAGTCCCCCGAGTGAACGTCCCGCTCTCAGACTGTCCTGCAGATTTCCCCTCGCGCCATACTGACTATGCCAACACACTCTTCATCTGCAGGATCACACACTGGCCCCCAGACAGCCCCTTCGCCCAagggcAGTTGATGAAGTCGTTAGGTCAGGCGGGAGTCATCGAGCCGGAAACAGAGGCCATGTTGATGGAGTATGATGTGGATTATTCAGAGTTTACAGATGAAGTGTTAGTGTGTCTACCACAGGGTCGACCCTGGACCATCCCACCTGATGAGCTGAGAAAGAGGCGGGACCTCAgGAAGGAATGCATATTCACGATTGATCCAGCCACAGCCCGAGACCTGGATGACGCTCTGTCCTGTAAACAACTTCCTGATGGTAACTTTGAAGTGGGCGTGCACATAGCGGACGTGAGTTACTTCTTGGAGGAGGGAAGTGCTCTGGATTACACAGCGAGCAGGAGAGCCACCAGTGTGTACCTCATCCAGAAGgtaatTCCGATGTTGCCGCGTCTCCTGTGTGAAGAGTTGTGTAGTTTAAATCCTCAAACTGATCGTTTAACATTCTCCGTCATCTGGACCTTAACACCTGAGGggaagatcctGAGTGAGTGGATGGGCCGCTCAGTGATCCGCTCATGTGTGAAGCTGAGTTATGATCACGCTCAGAGCATGATCAACTCGCCCCATAACGAGTTTGGAGCAGATGAACTCCCCCCAGTCTCCCCTGAACACTCAGTGCAGAGCATCCTCCAGGCCGTCCTGCACCTGCACACCATCGCCACTCACCTGCGCGCCCAACGCTTCAGGGGCGGAGCCTTACGTCTCGACCAGaTGAAGCTGGCGTTTACTCTGGACTCTGGGTCAGGAATGCCTCAGGGCTGCTACATCTACCAGTACAGAGACAGCAACAAGTTGGTGGAGGAGTTCATGTTGTTGGCCAACATGGCTGTAGCTCATCATATTTACCGCTCGAACCCTGAGCTCGCGCTGCTGCGGCGTCATGCAGCCCCTCAGAGCCGTCTGATGGAGGCGCTACAGGAGCTGTGTGATCACATCGGCCTCAACATCGACATGAGCTCGGCTGGATCCCTGCATAGGAGTCTGGAGGAGGCAGTTGGAGATGACGAGTACAGCGCAGCCAGGAAGTCTGTACTCACACACCTGTGTGCCAGACCCATGCAGatggcgGTGTATTTCTGTACAGGAGTTCTGCGGGATGAGAAGTTGTTCCATCACTACGCTCTGAACGTACcgctctacacacacttcacctctCCCATCCGCCGCTACGCCGACGTCATCGTCCACCGCCTGCTGGCCGCTTCACTcaagtgtgGACCTCGTGTGCATCTCGCCCAAGATGAAGTGGAGAAGCAGGCCTCTCACTGTAACGATAAGAAGACAGCGTCCAAGAGGGTTCAGGAGATGAGCACAGAGTTGTTCTTCAGCGTCTTCGtcagggagtgtgggCCTCTGGACTCCAAGGCGATGGTGATGGGGATGCTGGATAAATCCTTTGATGTGTTGGTGCTGGACTATGGAGTTCAGAAGAGGATCTACTGTAAcGCCATTGAGGGTCTGCAGTCGTTTAATTTCCGTAAAGTCGGTAAACGGCCTGAGATGACCCTGGTTTGGACTCCGAACGAACTAGAAGATGAAACAGTTACACAGgagATCTCCCTGTTCTCCGTGGTGGATGTGCGGCTGACTTCTGGTGAAGGTCCTCTCAAATACACGGCAGTACTGATgagacccacacacacccagtcctgaacacacacacacacacacacagtcctgaacacacacacacacacacacacacacacacacccagtcctgaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68256 lncRNA downstream 1941 857747 ~ 861437 (-) True G57742
TU68259 lncRNA downstream 17362 507094 ~ 846016 (-) True G57745
TU68393 lncRNA downstream 21717 827321 ~ 841661 (-) True G57850
TU68346 lncRNA downstream 36794 544163 ~ 826584 (-) True G57816
TU68389 lncRNA downstream 37514 822250 ~ 825864 (-) True G57848
TU68404 lncRNA upstream 23122 909517 ~ 910029 (-) True G57861
TU68417 lncRNA upstream 99516 985911 ~ 1044147 (-) True G57868
TU68271 lncRNA upstream 123830 1010225 ~ 1011047 (-) False LOC117597039
TU68426 lncRNA upstream 126519 1012914 ~ 1013189 (-) True G57877
XR_004577952.1 lncRNA upstream 152630 1039025 ~ 1040876 (-) True LOC117596994
XM_034303498.1 mRNA downstream 6178 848073 ~ 857200 (-) True LOC117597014
XM_034303500.1 mRNA downstream 143771 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA downstream 143771 710365 ~ 719607 (-) False LOC117597015
XM_034303503.1 mRNA downstream 159000 700049 ~ 704378 (-) True LOC117597018
XM_034303492.1 mRNA downstream 457614 395440 ~ 405764 (-) False LOC117597013
XM_034303352.1 mRNA upstream 38639 925034 ~ 933915 (-) True LOC113524111
XM_026910270.2 mRNA upstream 50765 937160 ~ 942590 (-) True LOC113524137
XM_026910273.2 mRNA upstream 58649 945044 ~ 961033 (-) True LOC113524140
XM_026910250.2 mRNA upstream 80635 967030 ~ 981643 (-) True LOC113524120
XM_026910251.2 mRNA upstream 99695 986090 ~ 992953 (-) True higd1a
TU68216 other downstream 6426 839432 ~ 856952 (-) False G57733
TU68378 other downstream 117347 683488 ~ 746031 (-) True G57838
TU68254 other downstream 128607 733555 ~ 734771 (-) True G57740
TU68368 other downstream 249135 612243 ~ 614243 (-) True G57830
TU68328 other downstream 366526 448725 ~ 496852 (-) False LOC117597012
TU68413 other upstream 155382 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 805931 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1113583 1999978 ~ 2000050 (-) True trnav-cac_1
TU69291 other upstream 1184629 2071024 ~ 2083929 (-) False G58534
TU69336 other upstream 1318157 2204552 ~ 2222099 (-) False LOC113523983

Expression Profile