RNA id: XM_034303498.1


Basic Information

Item Value
RNA id XM_034303498.1
length 1652
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC117597014
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 848073 ~ 857200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTCTAAAAGGTGGGAATATTTATGTGCCACAAGGGAAAAAATGTGTTAGCTCGATTTGTAATTCATGTAGTTTGTGtctatttcaataaaatattaacagctgAGAGGAATAAGCGCTAAAActgactgagaaaaaaaacgcAAGTTCAAAAAGCTTGTAAAAGACTGATGCAGGCTGTTACAGATCACTAGCTGTGAGAGTGAAGTGCGCATGCGTGAGATTTACTCGCTCTGAATCGAAACTGAAAGTGTAAAAGATGGAGCTTCAGCGGCACGGAGCGGAGTGGATCAAACCGAGTGTTTAACCTTCACACAtgctgctggtggtgttgtGTCTCAGACATTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTATCTGTATCAGCTGTCACTCCTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTGAATGGGAATGTTCTCTTGAGGCCAAATGGACTCTGTTCAGTGACCGAGATGATGTAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGatttaaaatgttccatgatcaGTACCTGAAGGGAAATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAGGAACAAATACAcgtgtgagtgtgatggtgaAGACATTAATGATGTGTGTCTCAGCATCGAGAcCATGATATCATCAGTTCAGTTAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGAAGTTGATCTATAAGGGTGGAGATTCAGCAGATCCTTATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATGGGGGAGTTTACATCGTCCGCGACACAGAGAATAATGAAGACCTTCATATTTACGCAGTATCAGTGAGAGatCAGCAGGAGAGAGCGCTACCATTGTGGGCGATTGTCCTGATAGTGCTGGTGGTGGCAGGGCTGTGCTTCTGCTGCTGCAGCTTCTTGTTGCAGAGTAAATCTGACTTCAGTTCTACCAAATTGCTAAACTTGTATAGAGGATCAGCAGTGGAGCAGGAAGAGAACAGACCTTGAATGGTACCTCAGAAATGCCTAAACTGCCAGAGAAGCAAATGATGATGAAGCAGGAAGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGACTTATAACTTCATACAGCATGTTtggattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTCCAGAAGTGCTCAGGTTTGTGAACCCTGCAAGCTCATGTTTTTTCCACCTGTCTGTTGTGATTCTTCTCCTTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcacacacacgtgttcactagctgggactgatcagtatttactgggtgtgtcctcacacacacgtgttcactagctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68259 lncRNA downstream 2057 507094 ~ 846016 (-) True G57745
TU68393 lncRNA downstream 6412 827321 ~ 841661 (-) True G57850
TU68303 lncRNA downstream 20643 364792 ~ 827430 (-) True G57787
TU68346 lncRNA downstream 21489 544163 ~ 826584 (-) True G57816
TU68389 lncRNA downstream 22209 822250 ~ 825864 (-) True G57848
TU68256 lncRNA upstream 547 857747 ~ 861437 (-) True G57742
TU68404 lncRNA upstream 52317 909517 ~ 910029 (-) True G57861
TU68417 lncRNA upstream 128711 985911 ~ 1044147 (-) True G57868
TU68271 lncRNA upstream 153025 1010225 ~ 1011047 (-) False LOC117597039
TU68426 lncRNA upstream 155714 1012914 ~ 1013189 (-) True G57877
XM_034303500.1 mRNA downstream 128466 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA downstream 128466 710365 ~ 719607 (-) False LOC117597015
XM_034303503.1 mRNA downstream 143695 700049 ~ 704378 (-) True LOC117597018
XM_034303494.1 mRNA downstream 399522 395440 ~ 448551 (-) False LOC117597013
XM_034303472.1 mRNA upstream 6178 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 6178 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 6178 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 67834 925034 ~ 933915 (-) True LOC113524111
XM_026910270.2 mRNA upstream 79960 937160 ~ 942590 (-) True LOC113524137
TU68378 other downstream 102042 683488 ~ 746031 (-) True G57838
TU68254 other downstream 113302 733555 ~ 734771 (-) True G57740
TU68368 other downstream 233830 612243 ~ 614243 (-) True G57830
TU68328 other downstream 351221 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 549617 290510 ~ 298456 (-) False eif2b5
TU68413 other upstream 184577 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 835126 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1142778 1999978 ~ 2000050 (-) True trnav-cac_1
TU69291 other upstream 1213824 2071024 ~ 2083929 (-) False G58534
TU69336 other upstream 1347352 2204552 ~ 2222099 (-) False LOC113523983

Expression Profile