RNA id: XM_034303500.1


Basic Information

Item Value
RNA id XM_034303500.1
length 1342
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC117597015
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 710359 ~ 719607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAGGAGCTTCAGCACGCAGGAGGAGCTTCGGCACGCAGGAGGAGCTTCGGCACGCAGGAGGAGCTTCAGCACGCAGGAGGAGCTTCAGCATGCAGGTGAAGCTTCAGCAGCACGGAGCGGAGTGGATCAGACCGCGTGTTTAACCTTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTACCTGTATCAGCTGTCACTCCTGTACAGGTGAAGTTTAATCAGGCTGCTGATCTGCCCTGTGAACGGAAATGTTCTCTTGAGGCCAAATGGACTCTGTTCAGTAACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAGATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAGGAACACGTACACGTGTGAGTGTGATGACCGAGACATTAATGATGTGCGTCTCAGCATCGAGAcCATGACATCATCAGTTCAGTTAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGAAGGTGATCTATAAGGGTGAAGATTCAGCAGATCCACATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTATACTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATCGGGGAGTTTACATCGTCCGCGACACGGAGAATAATGAAGATCTTCATATTTACTCAGTATCAGTGAGAGagagagcgctACCAGTGTGGGCGATTATCCTGATAGTGCTGATGGTTCTTCTGCTTGTTGCGCTGCCTGTGATGATAATCTGCTACCTGAGGAATCGGCGCTGCCAAAGAGATGAATCGTACAGAGGAGCAGCAGTGGAGCAGGAAGAGACCAGACCTGGAATGGTACCTCAGAAATGCCTAAACTGCCAGAGAAACAAATGATGATGAAGCAGGAAGAGAACCTGAAGCTCAAACCTAAGAATGGAGTACCAGAGGGAAGAGATTTATAACTTCATACAGCATGTTTGGATTAttactttttgttttgcatCGTTGTTTCTGCTCTGACTTTCACCAGAAGTCCTCAGGTTTGTGAATGCTGCAAGCTCATGTTTTTCCCACCTGTCTGTTGTGATTCCTCTCCCTGTGAGCTGCTCCATGTCACTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68340 lncRNA downstream 2123 501545 ~ 708236 (-) False G57811
TU68339 lncRNA downstream 2123 695573 ~ 708236 (-) True G57811
TU68217 lncRNA downstream 11022 521986 ~ 699337 (-) False G57733
XR_004577967.1 lncRNA downstream 11127 696118 ~ 699232 (-) True LOC117597022
TU68261 lncRNA downstream 12087 452633 ~ 698272 (-) True G57747
TU68381 lncRNA upstream 15314 734921 ~ 738411 (-) True LOC117597026
XR_004577973.1 lncRNA upstream 18562 738169 ~ 740709 (-) False LOC117597026
TU68382 lncRNA upstream 20412 740019 ~ 740760 (-) False LOC117597026
TU68383 lncRNA upstream 20412 740019 ~ 748267 (-) False LOC117597026
TU68384 lncRNA upstream 31979 751586 ~ 752375 (-) True G57843
XM_034303503.1 mRNA downstream 5981 700049 ~ 704378 (-) True LOC117597018
XM_034303482.1 mRNA downstream 212796 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 213555 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 258666 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 258668 395440 ~ 451691 (-) False LOC117597013
XM_034303498.1 mRNA upstream 128466 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 143771 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 143771 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 143771 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 205427 925034 ~ 933915 (-) True LOC113524111
TU68368 other downstream 96116 612243 ~ 614243 (-) True G57830
TU68328 other downstream 213507 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 411903 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 612242 95428 ~ 98117 (-) False LOC117596995
TU68254 other upstream 13948 733555 ~ 734771 (-) True G57740
TU68216 other upstream 119825 839432 ~ 856952 (-) False G57733
TU68413 other upstream 322170 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 972719 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1280371 1999978 ~ 2000050 (-) True trnav-cac_1

Expression Profile