RNA id: XM_034303503.1


Basic Information

Item Value
RNA id XM_034303503.1
length 1407
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC117597018
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 700049 ~ 704378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGATGGAGCTTCAGCAGCACGGAGCGGAGTGGATCAGACCGAGTGTTTAACCTTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTATCTGTATCAGCTGTCCCTACTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTAAACGGAAATGTTCTCGTGAGGCCAAATGGACTCTGTCCAGTAACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAAATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAAGGGTTTATACATATGTGAGTGTGATGGCACAGACATTAATGATCTGCGTCTCAGCATTGAGAcCATGGCATCATCAGTTCAGATAATCCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGGAGGTGATCTATAAGGGTGAAGATTCAGCAGATCCACATGGTGAACAGATCTGCACCGTGGATAGAAGCTCACTACACTGTACAGCTGAATACAGACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATCGGGGAGTTTACATCATCCGGGACACGGAGAATAATGAATATCTTCATATTTACGCAGTATCAGTGAGAGatgaGCTACCATGGTGGGCAATTATCCTGACAGTGGCAGGGCTGCTGCTTGTTGTTGTCCTGCTTGTGATGATCCTGGTGTATCAGAGGAAACGGCATCCGAGCTCCTGAGAACTTTACACAGAAGAGTGTAGCAACAGCAGGAGAACAGATCTTAAATGGCAACACAGCAATGATCAACTCAGGCACAAAGGATAATAGGATAAACAACAAACAGACTTTTATAATCAGGAACCGTAACGAGCTCTGAAGTGACAACGCAAAATATCACGGGTCAGATTGAAGTTTATTGGTAAGGAACATCAAAAACCCTGCTTTCGCTTGGAGATCACGAGTTTAAGTCCCCACAATACCACAGCCGTTCGTGGCCGTGAGTACAAGAGGGctaaactggctgtgctctctgggtgggaggggcatactctctctcccctgtcaatcacagtgacactagcctattgtagcgctttcctctgagtttGATTCTGCTCCTGGGatcctgtgtggagtttcactaTATTTATCCTAAATTTCCCCTTTGGGATGAAAAACGAAtgtctacctatctatctatctatctatctatctatctatctatctatctatatatctgtctATTCAtatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68217 lncRNA downstream 712 521986 ~ 699337 (-) False G57733
XR_004577967.1 lncRNA downstream 817 696118 ~ 699232 (-) True LOC117597022
TU68261 lncRNA downstream 1777 452633 ~ 698272 (-) True G57747
TU68359 lncRNA downstream 7781 640677 ~ 692268 (-) True G57823
TU68275 lncRNA downstream 25561 600626 ~ 674488 (-) True G57761
TU68224 lncRNA upstream 5305 709683 ~ 761025 (-) False G57733
TU68381 lncRNA upstream 30543 734921 ~ 738411 (-) True LOC117597026
XR_004577973.1 lncRNA upstream 33791 738169 ~ 740709 (-) False LOC117597026
TU68382 lncRNA upstream 35641 740019 ~ 740760 (-) False LOC117597026
TU68383 lncRNA upstream 35641 740019 ~ 748267 (-) False LOC117597026
XM_034303482.1 mRNA downstream 202486 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 203245 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 248356 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 248358 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 251478 395440 ~ 448571 (-) False LOC117597013
XM_034303500.1 mRNA upstream 5981 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 5987 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 143695 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 159000 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 159000 863378 ~ 886350 (-) False dis3l2
TU68368 other downstream 85806 612243 ~ 614243 (-) True G57830
TU68328 other downstream 203197 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 401593 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 601932 95428 ~ 98117 (-) False LOC117596995
TU68254 other upstream 29177 733555 ~ 734771 (-) True G57740
TU68216 other upstream 135054 839432 ~ 856952 (-) False G57733
TU68413 other upstream 337399 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 987948 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1295600 1999978 ~ 2000050 (-) True trnav-cac_1

Expression Profile