RNA id: XM_034303519.1


Basic Information

Item Value
RNA id XM_034303519.1
length 2655
RNA type mRNA
GC content 0.53
exon number 22
gene id abcf3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8016413 ~ 8031250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAAATGCAGCAGGGAGACtccgcgcatgcgcactggAGTCTCAGCAGGAGCCGCGGTGTAACATGGCGACGTACGTGGACATTCTGAAGAGCGAGTTTCCCGAAATTGACACTGAAGTGTTTGATTATATTACTGGAGTGCTGGACAGCGGAGGCTCAGATTTTGAGGATGGAGCAGAAGTGTTCGACGCCATTGGTGGAGTTCTACAGGAAGTAGCAGCTGAGAAAAATGAAGATGACGTCCGAGACATCTGCCTGCAGCTGTTTAACACGCTGAAGATcaATAACTGTCACTCTAACCAGAGGCAGGTGCTGCTGGATGCTCCTGTGCAGCTCTCTCAGATCTCTGCAGAGACGGAATCGGCTGTTAATGATGTGCAGGGCATTTGGATGGTGAAGAGAACCCAGGGCACGACTGTGGATGCGAAGAAGTTAGAAAAAGCAGAGGCCAAGCTGAGAGCTAAGCACGAGCGGAGGAATGAAAAAGACTTGCAGAAACCCTCAAACCCGCTGGTGCTGGAGGAGGCCTCGGCCAGCCAGGCTAGCAGTAAGAAGGAGAGCCGTGTGGACATGTCGGGGAAGAATCGCAGCTACGACATCCGGATCGAGAACTTCGACGTGTCGTTTGGAGAGAGGTCTCTGCTGCAGGGAGCCGAGCTGTGTTTGGCGAGCGGTCGCAGGTACGGTCTGATCGGGAGGAACGGCCTGGGGAAGACCACGCTGCTGAAGATGCTGGCGAGCCGCAGTCTGCGTGTCCCAGCCCACATCTCCATCCTGCACGTGGAGCAGGAGGTGGCAGGAGACGACACGCCCGCACTGCAGAGCGTGCTGGAGAGCGACACGGTCAGAGAGGAGCTGCTCGCCGAGGAGCGCTCGCTCAACGCACACATCGCCAACGGCACAGCGGAGGGGACTGAAAGCTTGCGTCTGTCAGAAATCTACGCTAAACTGGAAGAAATCGAGGCAGACAAAGCACCAGCCAGAGCTTCAGTGATCCTTGCAGGTTTAGGATTTTCCCCCAAAATGCAACAGCAACCAACCAAAGAGTTTTCTGGTGGTTGGAGAATGAGATTAGCATTAGCGCGAGCTCTGTTTGCAAGGCCTGACCTTTTGTTACTTGACGAGCCCACGAACATGTTGGACGTCCGAGCCATTCTGTGGTTAGAGAATTATTTACAGACGTGGCAGTCCACCATCCTCGTGGTGTCTCACGATCGGAACTTCCTGAACGCCGTCGCGACCGACATCATCCACCTGCACTCACAGCGTCTGGACAGTTACCGTGGCGATTACGAGAACTTCATCAAAACGAAAGAGGACCGACTGAAGAACCAGCAGCGGGAGTACGAGGCTCAGTTACAGTACAGAGAACACATACagGTGTTCATCGACAGGTTCAGGTACAACGCCAACAGAGCTGCACAGGTGCAGAGCAAGCTGAAGCTTTTAGAGAAACTCCCTGAACTTAAGCCTATAGAAAAGGAGTCCGAAGTCATTTTACGATTTCCAGATAATTTCGAGAAGCTGTCTCCTCCCATCCTGCAGTTAGACGAGGTGGAGTTTTACTACACGCCCCAGCAGCAGCTGTTCACCGGCCTCTGCGTCTCCGCTGATCTCGACTCCCGGATCTGCATTGTAGGTGAGAACGGAGCGGGTAAGTCCACGTTACTGAAGCTGCTGATGGGAGACCTCACACCCGTAAGCGGCACCAGACACGCCCACAGAAACTTGAAGATTGGTTATTTCAGTCAGCACCATGTAGACCAGCTGGACCTCAACGTCTGTTCAGTGGAGCTGCTTCTCAGCAAGTTTCCTGgTCGGACCGAGGAGGAATACAGGCGTCAGCTGGGGAGGTACGGGATTAGTGGAGAGCTGGCGACGCGGCCCGTGGCGAGTCTTTCAGGAGGACAGAAGAGCCGTGTAGCGTTTGCTCAGATGACCATGCCGTGTCCCAACTTCTACATCCTTGATGAGCCGACCAATCACCTGGACATGGAAACCATTGAAGCCCTTGCAAAGTCGTTAAATACGTTCAAGGGTGGCGTTGTGCTGGTCTCGCACGACGAGCGCCTCATCCGGCTAGTGTGTAAGGAGCTGTGGGTGTGCGAGGCGGGACGAGTGCATCGCATCGACGGCGGCTTCGACGAGTACAAGAGCATCCTGCAGGAGCAGTTTCAGAAAGAAGGCTACCTGTGAAGCACCTCACTCCATCGACACGCACACCGTTTAAACTGACGGCATCACCATGACCCCAACACGCTCATTGACTCTGTGTACAAAGTGAACTCCAGCGTACAGTCGCCCTGAGCCAGCTTCCTGGAAGCTGAACCAGAACTGATACTGAATTGGTTCCCATTCCAGTCAGCCCATTTTCCCAGCTTTCTGAAATCATGGCATCGCTGCTTGCTGCTGTGGCTCACGCTGCGTCCTTTACCGGTCATGTGACATGAGGGCAGGCTGAGGATGTACCCGCTAGGGTTCTCTGCACGGGTTCATCTTATTTctgtacctaaaaaaaaaaaaaaaacaagcctgaCGCAATAAATGTAAAGTGAGGTGGACGTGTGCCATTTATGTTGTTTGGATGCGGCTGTTGTCGTTAACTTATCAACATCAGTTTTAGAACACGCTAATAAAAACCTAACGTTCAATCA

Function

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72112 lncRNA upstream 229778 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA upstream 229778 7786267 ~ 7786635 (+) False G60931
TU71962 lncRNA upstream 314315 7611023 ~ 7702098 (+) True G60804
TU71966 lncRNA upstream 349194 7618473 ~ 7667219 (+) True G60807
TU71963 lncRNA upstream 398712 7593320 ~ 7617701 (+) False G60804
TU72309 lncRNA downstream 78228 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 86458 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 186844 8218094 ~ 8238482 (+) True G61162
TU72427 lncRNA downstream 260678 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA downstream 264121 8295371 ~ 8296101 (+) True G61176
XM_026914074.2 mRNA upstream 1894 8011970 ~ 8014519 (+) True polr2d
XM_034303615.1 mRNA upstream 7973 7937514 ~ 8008440 (+) True cacna1eb
XM_026914108.2 mRNA upstream 205845 7790827 ~ 7810568 (+) True LOC113526772
XM_026914109.2 mRNA upstream 205845 7790827 ~ 7810568 (+) False LOC113526772
XM_026913884.2 mRNA upstream 230237 7743431 ~ 7786176 (+) True LOC113526636
XM_026913930.2 mRNA downstream 2811 8034061 ~ 8053897 (+) False si:ch73-140j24.4
XM_034304005.1 mRNA downstream 3002 8034252 ~ 8053897 (+) True si:ch73-140j24.4
XM_026913931.2 mRNA downstream 3097 8034347 ~ 8053897 (+) False si:ch73-140j24.4
XM_026913298.2 mRNA downstream 24806 8056056 ~ 8062839 (+) True LOC113526345
XM_026913275.2 mRNA downstream 53896 8085146 ~ 8101065 (+) False LOC113526329
XR_004578001.1 other upstream 1419852 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1585836 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1872776 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1877041 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 2420287 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 24806 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 664102 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 863220 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1727210 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1776071 9807321 ~ 9832280 (+) False gal3st3

Expression Profile