RNA id: XM_034303521.1


Basic Information

Item Value
RNA id XM_034303521.1
length 3629
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC117597034
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28863057 ~ 28868178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acggaTTTAGAACGTAAAGCTGTAAGAGAGGGGGGACTGTGACGTCACAAGAGGAGGCTTTGGCGTCACAGGAGGAGAAGGGACAAAAAATTTCAGGTTCTTTAGTTCAGTTACTGCATTTTACAGATCACATGCCAGagAAAGCAAtcagagagaaaacactgaatTCATACCCACGTGATTCAAAGATGAGTAAGAAGAAGAGAAGTAGCCAGAGAAGAACAGCTGGAACAGCTGGAACAGCTGGAGCGTGCACTCAGGACTCCACATCTGACCAGAGACTGAAGTGTTTCAGGGACATTATGGACGTCGTTCTTCATCTGAGCGAGGAggaATGGAAGGCTGTGACCAGGGACATGACGAAGAAGGTCACAAAGTTGGAGTTTGCGGCTCTGTGCACGAAAATCGTGATGTCAGCGGCGTCTTCTGCCATTAGGTGTTTACTGACGCCTCTCATGGAAAGCTTCGGGATCGATTCGATTCTCCAGGCAAACGACAAGCTGAAGAAAATGCCCGAGTCTAAATGGAGGAAGTGGTCTGACTCAGACACCTCAGCTCAAAGATCGCCTATGGAGACGTCTGATTTCATCTGTCAGCTCGTTCAGAGAGTCGTCACTCAGACAACAGCTGCGATGCTGGAGGCGATCCGGAGAGTGGCATCAGGACGGAGGACGATCTGCTCGGCGAGAGCTTCATCACCTGCAGAAGATCAGATCTCACAGTCAGATCTCAGCATCGCATGCACTAATGAGATCTGTGATAAGATCTTGGCTCTGTGTTACTCTGGTGATTTCGACAGCCCCGGAGGAGAGAAAACTTCAGGAACGTCGCTAAAGTCCCACCAGGAGGTCCAGGGAATAATGAAGGGCTTGGAAGAAGTTGTCTCCACCAGCAAGTCCCCTTTTGAGTTAACTCTAAAATCCTCGACCCCTGATTCGGTCCCTGTGACGACTAAAGTGATGGCTCCTGATTGTGCTGAGAGGCTTTTCAGTGATCAGTTTCTGAGCAAAGCCACACAAGCGGTAAGAAAAGTTCTTctgaaaacagaggaaaaaatcaCTGCCGCAATGTCGTCCCAAACCTCCGTCCCTGTCCGCAGTGAGACGGAAATGAATTCCCTGATGGAGGAGGTCAAGAGAACAGCCTCAAAAATTCTGTGGGAATTAGTTTTTATACTTAGACAGTCACTGTGTAAAAGTTCATCAGGTGTCAGTTGCAATGCTGCTGACCAGTCTGGACCAGAAGATGAGAGGAAGAACTTCCTCTCTGGTGCTCGAAAGATCTACGGGAACATCTTCAAGCAGGTGTTTGAATTCACCTCTGGGAGGAAGCAAGCGATTTCCGAAAAAAACAAGTCGTTCTTGGACGTCTGTCCTAAAACTGCTGCCGAGCTCGACGGCAGGTCGGAGAACGTCCAGGAGTCTGCTGCTGCTGAACGTTACCTCGATAAAGCCATTCTGGTTGCGAGTGAGATCCTAGAGAAGTGGTTATCTTCAAAAATTTCCACAGGTTTATTCAGTGGGAAAGATTCGGGTTCCAGCACAGAGTCGTCACCGACGGCGTCAGTAGATCTGGATCGAGTCACTGCTGAAATCGTAAATACGGTGATCAGCGGAATGGCTCTCGAGATCGGAATAACAGACATGGAAAACGGATCGGAAGCTCAGGTAGGTGAAGCTCAGGTGAGTGATGCTGATGCTCGCCCAGCTCCCTACTCAGAGACCTCCTCAGATGTTATCACAAAGCACCGAAGTCTTACTGGACtcggagagaaaaagagaccgTCGTGCTCGAGCCTGGAGaacgcagcagcagcagcagcagcagtgactgATGCTCAGAGCCTCGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTGCACTGAGGAGCTAATTGAGAAGAACGCAGATTTATTACTGCGTGACAAGCTCCCGGCCAAGTCCCGCTCTTCTAAAGTACCTTGGTTCAGACGGTTTGCGTTCTTGCAGCCGCGTAAATCCGGTCGTCTGAGGTCTGAGGTGAGCAGTTCTGTTCCTCTGAGGTCTAAGGAGTTCCTCAATAAAGCCACTCAGATGGTgagtgaaatgctgctcagaaGGCTGTCGACAGCAGATTCCGCGAGATGCTCGTCAGAAGATGAGCAGAGTGCCGTTAGTACTGCAGATTCGCTCGTCAGCGTTTTATACGAATGCGATGAGTCTGTGAAAGACGAGACTAAGAGCTCTGATGCTCTCGATGCCTTTTCCTGCCTCTTTGACGTCAGAGAAGCAGAATCTCCCAAAAAGCCACAGAACATCTTGAGAAAAGTGCGAAGTCTCCTTCAGGCGTTTTTCTCAAAGGCATCTAAAGCTCTGAGCTCTCCCACACACGAGGAAAGGGTGGAGGAGCAGGTGGACCTGGACCTGTGCACCAACAGCGTCATTACTGAGGTCACTGATTTGTTAAGGAGTGAGCTGACAGCTCCTCCTACAGTGAAGAACGATGACGCCCATTTCCAGACCAAATCCGCCAGGCGTGTGAGTGACCTAATCTTCCGAATGGTGGAATCCTGTCGTCTGCTGCCCTCACAATTCCCAGAGGAACGTCTCATGAAAGTGTCGTCAGCGTTACATCTGCAGATCCTTTCTACTGAGATTTCCCAAACTGTTAGCGCCACTTTGCGGCAGTTTATAGATGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAACAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAATCAGCTGAAGGCTTTTTTAACTTCCTTCTCTAAACATGTTGCTGACGATGAAAGGACAGATGCGTCAGCACAGTCAGACAGGGATGAGGATCGTGTCACTCCCATCTACATCAGTGAGGATGGCACGATTCATGAGCTAACAGAGCTGGAGGATCTTTCTCCAAAGGAGATGATCCATCGACGAGCACGTGCTACAAAGGATGTAATTCCAAAACTCCCCCTGAGGAACGTGGATAGGGCAGATGTTGGCCAGTGTTCATCGGATTCTGTTCCAGGGAGAGAGAACAACGTGTTACGCTCCATCCAGTTACCTTCCGAGTGCGTTTACATGTTTGCAGAGGAGTCCATCAAGGCTTTACTGAAGAATGTGCTAAACGCCAGGCCGAGTGCAGGAAACGAAGCACAGGAATGCAGCTTCGTGGACAAATCGACCGGTTGTCCGTTTGCTACAGTGCTCGCACGTGAAATCGAGGATGCTGGGACTTCCTCTAAGTCTCCTCAGCTATCAGCAGCTCCCTCCAGCTCATCTCCTCATGCTGACGTGGAAGAGACTCTGGAACATCTGAGGAACGGGCGCGTGAGCAAGAAGTGCAAGAAGAAGCAGAGAGCTCCTCTGACAGGCGATGACCAGCCGACCCCATTGAGCTCCACAAATCTTCACGAATCTTCACACACAGAATCGAGGGCCTCGGGGCGGTTCTTCAGGAGCGCTCGCAGAATGCTTGGCCGGATCTTCTCCCCCATCTGCAATTTCTTCGACAGACACCCCAactttaaagctgtgtgtgttgatgtgttaaTGGGTTCTATTGCATGTTATTGTGTGGGTATGCTTGTGTTAATTATGGTGttagtgtgtatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86346 lncRNA upstream 65920 28792847 ~ 28797137 (+) False selenot1a
TU85895 lncRNA upstream 71221 28787617 ~ 28791836 (+) True G72472
TU85891 lncRNA upstream 101606 28758555 ~ 28761451 (+) False gng5
TU85849 lncRNA upstream 204521 28658276 ~ 28658536 (+) True G72428
TU85843 lncRNA upstream 211436 28651414 ~ 28651621 (+) True G72422
TU86402 lncRNA downstream 5425 28873603 ~ 28873988 (+) True G72872
TU86425 lncRNA downstream 46451 28914629 ~ 28915189 (+) True G72889
TU86423 lncRNA downstream 46605 28914783 ~ 28915258 (+) False G72889
TU86429 lncRNA downstream 49564 28917742 ~ 28918398 (+) True G72892
TU86452 lncRNA downstream 62898 28931076 ~ 28931398 (+) True G72910
XM_026936512.2 mRNA upstream 20295 28832373 ~ 28842762 (+) True txndc12
XM_026936513.2 mRNA upstream 31329 28827952 ~ 28831728 (+) True LOC113540201
XM_034304057.1 mRNA upstream 39555 28814083 ~ 28823502 (+) True zgc:153615
XM_026936510.2 mRNA upstream 39555 28814083 ~ 28823502 (+) False zgc:153615
XM_026936511.2 mRNA upstream 65898 28792853 ~ 28797159 (+) True selenot1a
XM_034303853.1 mRNA downstream 16973 28885151 ~ 28887556 (+) True LOC117597120
XM_034303522.1 mRNA downstream 33352 28901530 ~ 28906396 (+) True LOC117597035
XM_026936508.2 mRNA downstream 55433 28923611 ~ 28930532 (+) True cope
XM_034303336.1 mRNA downstream 72496 28940674 ~ 29042995 (+) False st6galnac5a
XM_034303341.1 mRNA downstream 72496 28940674 ~ 29042995 (+) False st6galnac5a
trnat-ugu_8 other upstream 1241674 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1242380 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1305155 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1306409 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1373732 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 6178 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 751815 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1877953 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1877953 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2193552 31061730 ~ 31097888 (+) False spsb4a

Expression Profile