RNA id: XR_004577982.1


Basic Information

Item Value
RNA id XR_004577982.1
length 1784
RNA type misc_RNA
GC content 0.40
exon number 4
gene id LOC117597037
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28873578 ~ 28884965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcagtttgtcttttatttaaattgtaaactgtaaaagtaaaaaaaatattttggttattgttattgtgtctGATGCTTATGGTTGTTTAGAAAGCCTGTATGTACAGCCTTATTAACATACACaaactgaccactttattaggaacaactgtacacctgctcatttatgcagttatccagtcagccaatcatgtggcagcaccGGAACCatcaaatcatgcagatacaggtcaagggcttcagGTTACACTCGATTCTCAAGAGTTTCCCTTGGTACTGAAGTGCATGTCATGTTCCTTCTCTGCTGGGAAAGCACCGCACAATGACATAGTGGCATTTCTGTTCCAAACTTCTCACTACAGTACCGTGGGCTTCAGGACGGTGCCATTGCCTCTGTCATGCACCAGCTCACTGCAGACCTGGGACACAGgGAATTGCACCAGAGGCTATAAAGGACATGGCGGTGTGTAACCCAGTGGCAAAGACAAAGAATGGTGTCAGGACTGGTGTGAAGAGCACACTGTACAGAGCATGTGGTGTCATTGTGCGGTTGCTCGGTTACGGTCTCCACGATGGATGGGAAAACGTGCAATATGAAGATCACGGAGGTCATCAAACCGGGAATGAAGAAGATCGTAGCGGGACAGGGGCTGCCCTTCCCCAAGAACCCTGAGCAAAGAGGAGATCTCATAGTGGAGTTTGACGTGAACTTTCCAGACAGTCTGCCGTGCAACGCCAAGGACGTGCTGAAGCGCCATTTGCCCGCTTGATGAAGGGAACGCAGCAGGACTGCGGCGGCGTTAAACGGCGCGCCACACTGACGCTCGCCATCTCTCCCGATCCAACACTCGGACAAATCGCCGCTACGCCCCATAAACAATGTGCAATTTCGGGCATCCGGGAAGCTTAGACAGCTTTCTTAAAAGTTATTAtagtatttcttttatttgttaatcatttgtcaattcttttaaaaaaatctttaaattgaaaaaagtattttaaaaatagttcttatagatatatatagctTTAGATCCTGTTTTACTGGTATCCTTATAAAAGATGTCTACTTTTTAAAGAGACaattttaagaagaaaaagctCTAAgacctaatatttgaataactgaataattggattatatttataaaataaattcctgcTAAGggggccatgttttttttaaatattattttttatatattttatttttatattcattattatgttatttatattttttaacagttaaaggGATTCGTGGCTTGAATTATTTTGGGAACTTTTGCACAAAGGCACTGCATCAGTTGTGCTGTGAGAGAGTCAGTGCTAATGTGTTCATTTTGGAGACTAATTTATATTTAGTTTCCATTTTAGTCTCTTGACAAGAATAATagtttttagtcattttagttTCTTGGTTATTGTTGGTTTtagtctggattttttttagtaatttcaGTCAAGTAAAAGTGAACAGTGTTGCTTGCTGTCATTTTGTTTCGAGATGGAAAAAAGGAAGTGAacatgttttgtcttgttttttagCCACACACTGAGCAGTGGAGAGGGTATACAGGGCGATCTTTAGTTGTGTTACTTCCACCCTGAGAGCGCTGAGATCTACAGATGTTGAGCGTGCTGCTGTAATAGACATGTCACCTGTCCACTAGGGGACGCCACATGTTTAAAGTGCAGCATGGAACAGGTGTGTACCGATACCGAAGCTTCAGCTCACAATTATCACATAACCTGtatcattcaattcaattcaattcaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86430 lncRNA downstream 39860 28832384 ~ 28833720 (-) True G72893
TU86322 lncRNA downstream 81751 28787623 ~ 28791829 (-) False LOC117597168
TU86345 lncRNA downstream 89440 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 155625 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 204937 28667323 ~ 28668643 (-) True G72796
XR_004577988.1 lncRNA upstream 7051 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 7051 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 7051 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA upstream 7051 28892016 ~ 28896799 (-) True LOC117597038
TU86785 lncRNA upstream 55697 28940662 ~ 29029187 (-) False LOC113540203
XM_026936503.2 mRNA downstream 12137 28842922 ~ 28861443 (-) True gipc2
XM_026936494.2 mRNA downstream 61276 28798977 ~ 28812304 (-) False LOC113540190
XM_034303523.1 mRNA upstream 26648 28911613 ~ 28918149 (-) False LOC113540041
XM_034303525.1 mRNA upstream 28714 28913679 ~ 28918152 (-) True LOC113540041
XM_026936498.2 mRNA upstream 170047 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 246221 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 246221 29131186 ~ 29147359 (-) True zzz3
XR_004578096.1 other downstream 221155 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 636775 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 637313 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 831795 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1248772 27624736 ~ 27624808 (-) True trnat-ugu_9
TU86878 other upstream 263673 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 638429 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 638758 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 639544 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 640024 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile