RNA id: XR_004577984.1


Basic Information

Item Value
RNA id XR_004577984.1
length 3209
RNA type misc_RNA
GC content 0.44
exon number 2
gene id LOC117597037
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28873578 ~ 28884965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCTGCAGAAGTTCTCTGTTGACTCTGCAATTGTTGGCCTCATCACTGGGGAGGATGATGCAGACTAGAGAGAACTGATCCAGGACGTTGTAGTCTGGTGCCAGCGGAACTGCCTCCGGATCAAAGAGCTGGTGGTGGATTTTTGGAGACACAGACACTTACCCCGGTCACCGGTGAACATCCAGGGAATGGACATTGAGATAGTGGACTCATATAAGTACCTCGGTGTTCACCTCAACAATAAAATGGACTGGACGGACAACTCCACTGCACTCTACAACAAAGCCCAGAGCAGACTGTACCTGCTGAGGAGACTTAGGTCTTTTGGAGTGCAGGGAGCACTtcttaagacttttttttgacTCTGTGGTGGCATCTGCTATCTTTTATGGGGTTGTCTGTTGGGGTAGTGGCATCTCTGCTGCAGACAGGGAGAGACTGGATAAAATCATAAAGAGGGCCAGCTCTGTCGTGGGATGCACTCTTGACCCAGTGCAGGTGGTGGGAGAAAGGAGGATGATGGCCAAGCTATCAGGTATGCTGGAGAACGACTCCCACCCCATGCATGAGACTCTGGTGGCACTGGGCAGCTCCTTTAGTGACAGGCTGCTCCACTCCAAGTGTGTGAAGGAGCGATATCGCAGGTGCTTCCTCCCTGCTGCTGTGAGACTGTACAACCAGCACTGCTCCCAGCAGACCCCACCACTTAACTAGACAATAAATGTCTGGTACTAACTGGAAAGTAAATCTTTGGTAACCCCCCATCTCATGGGAACAGTGCAATAATGCAGTgtcactttaatactgttgtgtgtttgtgtttttgtgcattctctattgtattttttatatttacataattttttaaatttttttatatctttatatctgctgctgtaacaatgcaaatttcccaATTGGGGACGAATAAAGGAtcatctcatcttatcttaCAACTTTACTCCCCGCGGAAGGGGGAGGAGTTATAGGATTGTTTGCCATTGGTATAAAAGACCCCCTGTGGCATTCTGTGGTACACCTCGGTGGTCTTAGTCTACGGCTGAAGGTGCTCTGATGTGCCTCCAGCGTGGCGTGCATGGTGAGACATTGTCCATTATACTGAGTAGTTTCCTCAACATCCTCCTCTCTGACACCTCCACCAAAGACTCCAGTTCCACTCCCAGGACAGAACCCACTTTCCTGATGAGCTTATTGAGTCTATTGGCATCGGCCGCCTTAATCCTGCTGCCCCAGCACACTACAGCGTAGAAGATGACGCTGGCCACCACCCTGTGATAAAACATCTGCAGCATAGTTCTGCAGACACTGAAAGATCGTAGTCTCCTGAGAAGATACAGGCGACTCAGACCTTTCTCGTATAGAGCCTCAGTGTTTTTAGTTCAGTCCATCTTATTGTCTATGTGGATGCCCAGGTACTTGTAGTCCTCAACACTGTCTGTCACCTCTGTTTCCCGGATGCTGATTGGGTTCGGACGGTTCCTTTGCCTCCTGATATCCACCACCAACTCCTTGGTCTTTGTGATGTTGAGTTGCAGGTGATTTAGTTCGCAGCACTCCAAAAAACAAACTGTCCACCACATTCCTGTACTCAGCCTCCTGTCCTCTGCAGATACAACCAACAATGGTAGAGTCATCAGAAAACTTCTGCAGATGGCAGGATTGTGAGTAGTATCTGAAGTCTGATGTGTAGAGTgtgaacaaacagagagacaggaccGTCCCCTGAGGTGCCCCCGTGCTGCTCTCTATTGTATCTGACACATGGCTCTGCAGCCGTACATACTGTGGCCGACCTGTGAGGTAGTTGGTTATCCAGGCCACTAGTGGAGCATTCACCTGCATGTCCAGCAGCTTAGTCCTGAGCAGGGCAGGTCGTATGGTGTTAAAAGCGCTTGAGAAGTCAGAAAACGTGACTCTCACATAATTGCCTGCCTCATCCAGTCATTGTGCGGTTGCTCGGTTACGGTCTCCACGATGGATGGGAAAACGTGCAATATGAAGATCACGGAGGTCATCAAACCGGGAATGAAGAAGATCGTAGCGGGACAGGGGCTGCCCTTCCCCAAGAACCCTGAGCAAAGAGGAGATCTCATAGTGGAGTTTGACGTGAACTTTCCAGACAGTCTGCCGTGCAACGCCAAGGACGTGCTGAAGCGCCATTTGCCCGCTTGATGAAGGGAACGCAGCAGGACTGCGGCGGCGTTAAACGGCGCGCCACACTGACGCTCGCCATCTCTCCCGATCCAACACTCGGACAAATCGCCGCTACGCCCCATAAACAATGTGCAATTTCGGGCATCCGGGAAGCTTAGACAGCTTTCTTAAAAGTTATTAtagtatttcttttatttgttaatcatttgtcaattcttttaaaaaaatctttaaattgaaaaaagtattttaaaaatagttcttatagatatatatagctTTAGATCCTGTTTTACTGGTATCCTTATAAAAGATGTCTACTTTTTAAAGAGACaattttaagaagaaaaagctCTAAgacctaatatttgaataactgaataattggattatatttataaaataaattcctgcTAAGggggccatgttttttttaaatattattttttatatattttatttttatattcattattatgttatttatattttttaacagttaaaggGATTCGTGGCTTGAATTATTTTGGGAACTTTTGCACAAAGGCACTGCATCAGTTGTGCTGTGAGAGAGTCAGTGCTAATGTGTTCATTTTGGAGACTAATTTATATTTAGTTTCCATTTTAGTCTCTTGACAAGAATAATagtttttagtcattttagttTCTTGGTTATTGTTGGTTTtagtctggattttttttagtaatttcaGTCAAGTAAAAGTGAACAGTGTTGCTTGCTGTCATTTTGTTTCGAGATGGAAAAAAGGAAGTGAacatgttttgtcttgttttttagCCACACACTGAGCAGTGGAGAGGGTATACAGGGCGATCTTTAGTTGTGTTACTTCCACCCTGAGAGCGCTGAGATCTACAGATGTTGAGCGTGCTGCTGTAATAGACATGTCACCTGTCCACTAGGGGACGCCACATGTTTAAAGTGCAGCATGGAACAGGTGTGTACCGATACCGAAGCTTCAGCTCACAATTATCACATAACCTGtatcattcaattcaattcaattcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86430 lncRNA downstream 39858 28832384 ~ 28833720 (-) True G72893
TU86322 lncRNA downstream 81749 28787623 ~ 28791829 (-) False LOC117597168
TU86345 lncRNA downstream 89438 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 155623 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 204935 28667323 ~ 28668643 (-) True G72796
XR_004577988.1 lncRNA upstream 9852 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 9852 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 9852 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA upstream 9852 28892016 ~ 28896799 (-) True LOC117597038
TU86785 lncRNA upstream 58498 28940662 ~ 29029187 (-) False LOC113540203
XM_026936503.2 mRNA downstream 12135 28842922 ~ 28861443 (-) True gipc2
XM_026936493.2 mRNA downstream 45614 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA downstream 61274 28798977 ~ 28812304 (-) False LOC113540190
XM_026936495.2 mRNA downstream 61274 28798977 ~ 28812304 (-) False LOC113540190
XM_026936497.2 mRNA downstream 61274 28798977 ~ 28812304 (-) False LOC113540190
XM_034303523.1 mRNA upstream 29449 28911613 ~ 28918149 (-) False LOC113540041
XM_034303525.1 mRNA upstream 31515 28913679 ~ 28918152 (-) True LOC113540041
XM_026936498.2 mRNA upstream 172848 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 249022 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 249022 29131186 ~ 29147359 (-) True zzz3
XR_004578096.1 other downstream 221153 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 636773 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 637311 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 831793 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1248770 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577983.1 other upstream 163 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 266474 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 641230 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 641559 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 642345 29524509 ~ 29524687 (-) True LOC113540697

Expression Profile