RNA id: XM_034303535.1


Basic Information

Item Value
RNA id XM_034303535.1
length 5988
RNA type mRNA
GC content 0.54
exon number 25
gene id arhgap21b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27648814 ~ 27698656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAACCCTCGAGCACAATTCCAACATTGTTCCGCGCGAGTTAGCTGGTTGGTTTGCGCTCGCGCTAGCGTTAgccaaaaaaaacttttaaaaaccgttttttacttttttaaactaCAATAAACACAGGATTATGAGGTTTATATGACGGTAACGAGTCGGACTGaggatttttatttcattttcaatggGCGTTTGGTGTGACGTTAAGTTCTTTCTGCGGCTTCATTCCCAACAGGACGCGGGGAAGTCGAGGCAGGATGGACGTCTGCACCGCGATCAGATCGGATTAATCTGACGCTCCTCTAGATGTGGACTGCGGGGAGGTGAAACGATGGCGACAGGTTGGAGGAACGATGAGGACGAGGCGAGTTACAGCGTTAACACCCCGCTGTGTGAGgACATGTGTGAGCAGAAGGAGTCTCTGGCGTCCATGTTCCAGCCGGAGGACGAGGCGTTCTTGTGGCCCGGGCTGAAGGCGGTGCGGTTACGGCGCACGGCGCTGGGCTTCGGCTTCACCCTGCGCCACTTCATCGTGTACCCGCCCGAATCCGCCGTACATTCCACTTACACAGATGAGGACGGGGATCATCGAGGTCGAGCCCGGAACAgactggagcccatggacaccATCTTTGTGAAGCAGGTTAAGGAGGGAGGGCCTGCACACGGAGCCGGGCTCTGCACAGGAGACCGCATCGTGAAGGTGAATGGAGAGAGCATCATTGGGAAAACCTACTCGCAGGTCATTGCAGTGATTCAGAACAGTGACACCTTTCTGGAGCTGAGTGTGATGCCCAAGGATGAGGACATACTACAGCTGGCATATTCACAGGATGCCTACCTTAAAGGTCATGACGCCTACAGCGGAAATGCTCGCCACATCCCAGAGCCACCTCCCATATGTTACCCACGAGTAGACTGTAAACCCCTTGGGATGGCTGAGGCGACAGAAATCACTGCCTCAGGGGGGCTGCAATCAGATTTGGGATACCGTGTGGAGATACCTGTACCCCCTTCGCCTCCACCGAGGATCCCAAAGACTCAAACAGCGGTGTGCGTGTGCAACGAAAACGTCCGGACGGTGGTGGTGCCAGCAGAGGTCCACATGGGTCACATGGTTCCCGGAGAGTACAGTCACGCGGGTCCCGATCCTATGCTGATGAGAACGAGGTCATATCTTCACCCGCGCAAACCTGATCTGTATTCTCCAGGTTACCATGGAGATTCGTATGCCGTTCCACCGCCTCGTTATCATCCATCTTCTTCCACCGTTTCTCCGGCTTCCCAGCAAAATATTGACTGGCGAACATATCAGACTTACAGGGAATACATTGACCACAAAGGCCTCCACGCATACAGTCGGACGATTCAGGAGCGTTTGGACAGTTTGCGTGCTGCCACGGCTGCTTCACAGACCTCTTCAAACTTTGCGCAGAAAGCCACTTGGGGCAATAAAATCCGTCGTAGGAGTACGTCTCACGACCGGTCCTATCAAGGACCCCCTATGCTTCCGCCTCGCAGTGCCTCCCAGGATCGGATGACCGGGACAGAAAGAGTCTCCCGAGCGCAAGACTGGCCTCCTCGGAGCATCTCCTCCGACGAGATCATCCGGAATGCTCGCTTTCATTCCACGGACTACATCGAGCACGGTGAAATGGCTCCTTGGCCTGTTGATCGGAGAGGTTACGGCAGGACGGAGCAAGGACCTCGTCCCAATCGGCAGCCCGTTCCCCAGAGACCTGTGATGTATCCGCATTCCTATGGAAACAGCGTCCGAGGTAGATCCGGTCCACATCAGCTGAGCTGTAGAACGGACATCCCGCCTCCTGCGGTTTCTTCCGACAGAATCTTGCGCGTCGGTAAAAATCAGCCCAAAGAGGCACAGTCATGTAAAGACCAAAGACTTTTAAGTAATCACATTACAGTTTCAGTGGCTAGCCAGCAGTCCAGGACTCGTGCCGAGACGATGCAAAGTCCAGAACTGGTCAAAGAAGCCTCAGTGGGTCAAAGGTCAACCTCCTGCTCTGTGCCTACACCTCAGAGGCAAGTGCAACCTGGAGCTCCGGGGCAGAGGATCCACCCGCGGGATCTGAAGGGATTATCGGTGAATGGGTGCAGTCCGGTGGAAGGTGTAGTGATGCGAGAAAAACCCCCCACAGGGAAAAGCACACCGCTACGCCATCCTTCCTACATCCAGGCGCAGGAGCATCAAGACTCCCTGTTTAGCTCTGCTAACCTGAACGAATCGCTCGACTCCATCCCCTTCATCGATGAGCCAGCGAGTCCGAGTGTGGATCAGGGAGCCAGTCACATCTCTGCGTCGGCTGTGATCTCCATGGCTCAGAGCGCAGCGGCCGACTCTCTCAGCTCCGACACGCCGAGCCCTCACATGCGCAGACAGCTGTCTCACGACCAGGaatcTCTCAGAAGTGCTATTCTGGAACAAAGTGGAACCAGAACGGAGCGCTCCAAATCGTATGATGAAGGTTTAGACACGTACATGGAGGAGGGGCGGAGGCGTTCCAGTAAGCCCAGTCTGAAGGTGTTCAGGAAGgCTGTCGATGGCCATAAATCGTCGGATGACTCCAGTTCCAGGAGAGACTCTTGCTCAGACATCTTCACCGATTTCTTTAAGGAGGGCTGGCTACATTTCCGACAGCTCAACACGGATAAGAACAAACGTGTGGGTGGAGGAATGCGGGCGTGGAAGCAGATGTACGCTGTGTTGCGAGGCCACTCCGTCTTCCTCTATAAGGACAGAAAGGAGGCTCATGTGCACTCGCAGCTCGACGACGAGCCGCAGCAGGTGAGCATCAAAGCCTGCCTCATCGACATCTCCTACAGCGACACCAAGCGCAAAAACGTCTTCCGGCTCACCACGTCCGACTGCGAGTACCTGTTCCAGGCCGAGAGTCGCGACGACATGCTGTCCTGGATACGAGCCATTCAGGAGAACAGCAACCTGGATgacgagAGCACCGGTGTGACGAGCACCGACCTGATAAACAGAAAGATCAAAGAGTACATCTCTATGAGTGCTCCTACGAGTAAAACGGAACCTTCACCCAAAGCTTTGCGACAGTCTCTGagcatcaaacacacactgctggggGTCGCGGGGGGCAAGAGTCAGACCACACACTCTCCCAGGAACGAGCAGGAGAGGAGCAGCAAAGACGACTCGAGTCCACCGCGGGACAAAGCCGCCTGGAAGAGAGGGATTCCGGGGCTGAAGAAAAAGCCGCAGGAGAAAAAGCCCACAGCGGGAGTGACTTTTGGAGTGCGACTGGAAAACTGTCCTCCTGCACACAACAACAGGtttgTGCCACTGATAGTGGAGGTGTGCTGTAAGCTGGTGGAGGAGAGGGGGCTGGAGTACACAGGGATCTACAGAGTCCCCGGGAACAACGCGGCCATCTCCAGCatgcaggaggagctggataTTAAGGGCATGACCGACATGGACCTGCACGATGACaaATGGCGGGATCTAAACGTCATCTCCAGTTTACTCAAATCTTTCTTCAGGAAGCTACCAGACCCTCTGTTTACCAATGtgaagTATTCCGATTTTATCGAAGCTAATCGAACGGAGGATGGTGTGGAGCGATTAAAAGCACTAAAGAGACTGaTCCACGAGCTTCCTGAGCATCATTACGAAACCCTGAAGTTCCTGTCTGGCCATCTAAAGACTGTCTCTGAGAACTGTGAGAAAAACAAGATGGAGCCACGTAACCTGGCCATCGTGTTCGGCCCGACGCTGGTCAGAACCTCAGAGGACAACATGACACACATGGTCACTCACATGCCTGATCAGTACAAGATCGTGGAAACGCTCattcagcagTACGACTGGTTCTTCTCGGAAGACGGAGATGAGGAACCTGTAaCGGCTGTGGAGCAGGAGAGCACGGTTCAGTCTCAGCCTGTTCCTAACATCGATCACCTGCTGACCAACATCGGCCGCACCGCTCCCTCACCTGGAGACGTCTCAGATTCAGCCACCAGTGACTCTGCCAAATCAAAGGGCTCCTGGGGCTCGGGTAAAGACCAGTACAGCAGAGAGCTGCTGCGCTCGTCCATCTTCGCCAGCCGCAAGCGCAAAAAACCCAAAGACAAACCTCAGATGAGCAGCTCGGAGGACGACCTGGACTCCAGCTTCTCCAAGAAAGAGATTCAGGACGAGAGCGAGCCGAACGATGAGCGGAACGAGGAGGTTGAGAGAGAGGCAGGAGTCTGCGATCGTCTAGAGAAGTCTGATGATGCTGACCGGAGATCGGAAAAGAGCATCGTCAATGTTCCAACAGAATTTAAATCCGACATCCTGCCTCTGAAACCACTGCAGTTCGATAAATCCAACGAGTCTCCGAAAAAACACCgagtgctgagagagagagaagtggtgCGTCTGAATTCGCTCTCGGACCCGCCGTCGACCTCGTACGATGAGGGCTGCGTTTCCGATTTGGGAACGCTGAACAGCACGAGCTCTCAGGCGTCCGGCCCCAGAATCCGGCGGGGCAGAATTCCGGGTCCCTGGATGGAGAATGCAGGAGCGGAGGTGTGCTCCATCACGTCGGATTACTCCACCACGTCGTCCATGACGTTCCTGACGGGGATCGAGTCTACTGCGCTGAGTCCGGCTCACGACGCCGATGACGAGAGGAGCGAGCTTATCAGCGAAGGCAGAAACATCGATTCGGACAGCGAGAGCAACTTATCTGTGTTCGCGCTCACCAGAGACGACGGCGCGTCCGAAGACGTTTTATCTGTGCGAGAAGAAGGCGGAGACACGCCTTTTCAGAACTCCCCCAGTCTTCTGGTGTCGCAGCGCATCGTCGCGGGCGACACGTTAGCACGAAAGAGAGGAAGCCGACAAAAAACAGACAGCGAGTCTTCGACGGACGGTGGGCGTAGCGATAAAGAGTCGAGGATTTCAAAAATGCTGGATGTCGTCAAGGGGAAAAACAGCAGCAACGAAAACGACCCCATCTGGCGAATCAAAATCACCGATCGCCTCAAGTGTCGTCTCCGTTCCTCCGCTGATGACATGTTCGGTGTCGGATCGCAGCGCACCAGATCTCCCGAGACGCGCAGCAAACGCAAGACCAACATACGGCGCCGCCACACGATGGGCGGCCAGAGAGACTTTGCGGAACTGTCCGTCATCACCGGGGCCGAGCTCTCCGCCATGGATCGCTTAAAACCCAAGTGCAGCTCGCAGGACTTTTCCATTGCCGACTGGCTCGTCAGAGAGCGGCATCGCGCAAGCAACCCGGAAGTCAGCCTGGAAAACTCGGACCTGTTCTCCGCCGGGGCCTCGGGGTCCAGTTCGGGAATGTTAAACGGAGAAGCAGTGGCTCAGCTCAAAAGCTTCAGCTTGGCCTCCGATGCTCATCCACACAAACTGTCCGGGGCGCAGGTGGTGCGCTCGCGTTTTTATCAATACCTGTGAACGGATGGATAGAATTCTGATAGACTgaagcgtgtgtgagtgtaaggTACTTAAAACAAtgagttatttttttatacgtgatttaaaaaaagtgaagaagGACGGTACTGACGCAGGTTTCTGACAGTCAGGAAGAGGAGGGTGACGGATGACTgctggtggtgatgatggtcgGGGGGGAGGGGGGTAAACAGGCGACGTTATGTTCTCAAACGAAGTGGTCATGAACGTGATTTTTGAAAAGTTTTTAAGACGACTTGTTCTCGCAAGTGTAAGAAGGTCTCAACTCAACCAAAATGAAGAATGTATCTAATCTGCTTGCTGTAACGCTTAATTTGTGCTATTTCTCATCTTTTGTTTGTACATAGCCCCTTTGTTTTAATGTACTTGAAAAGATTTTTCCATTATTCGAATTTGTCTAGCGCTACTTGTGTAGCGTGGtggttttttaaaatgtgtataattaagGCCTCTCTGATGCAGCTGCTTATCTATTGTCATACgaccatcaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 89387 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 89704 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 89712 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 89801 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 93108 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 313088 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 415795 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 604195 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 617748 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 770292 28468948 ~ 28471765 (+) True G72336
XM_026936880.2 mRNA upstream 8853 27628448 ~ 27639961 (+) True prtfdc1b
XM_034304070.1 mRNA upstream 66792 27562149 ~ 27582022 (+) True dvl3a
XM_034303993.1 mRNA upstream 102685 27534676 ~ 27546129 (+) True ap2m1a
XM_026936183.2 mRNA upstream 131610 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935808.2 mRNA upstream 140615 27495848 ~ 27508199 (+) False abi1b
XM_034304019.1 mRNA downstream 158680 27857336 ~ 27939424 (+) True kmt2cb
XM_034304023.1 mRNA downstream 158680 27857336 ~ 27939424 (+) False kmt2cb
XM_034304022.1 mRNA downstream 158680 27857336 ~ 27939424 (+) False kmt2cb
XM_034304025.1 mRNA downstream 158680 27857336 ~ 27939424 (+) False kmt2cb
XM_034304020.1 mRNA downstream 158680 27857336 ~ 27939424 (+) False kmt2cb
trnat-ugu_8 other upstream 27431 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 28137 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 90912 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 92166 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 159489 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 1175700 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1921337 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 3047475 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 3047475 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 3363074 31061730 ~ 31097888 (+) False spsb4a

Expression Profile