RNA id: XM_034303541.1


Basic Information

Item Value
RNA id XM_034303541.1
length 908
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC117597042
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2730786 ~ 2732506 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAGCAAGCTATTTTTTCCCTTGGGAGAATCAAAAGGGGAGGGGATGTTTCAGACAAGCAAGAAGTGTTAGGAGAATACATTCTTCAGTTTGGGAAGTACAAAGGGAAGTCCTTCCGGTGGCTATTGGAGAATGATATTGGCTACACTTTGTACTTGTCCAGTAAGGTTGAGGAGGAAGAACGGGCTGGACAGTTCAACCCAGAGGGTCCTTGCAAGGATAGCCTCCTTTCCTTTCTTGAATACTCAAGAAGCTTTAAGGAAATTGAGGATCTCCGGCGATACCTTTCAGAGAGGCCAGACCCAGTACCAGTTTTGTCAGAGGATGACAATGTTGTTGGATTTGGGGCACGAGCACAAGACACCTGGAGGAAGATCTGGAATACTAGAGCTGATGGGTATGCTGCCTTTATAATGGGGAAGAGCTGTGTTCCAGGAAGTAAAATGTACCGCTTGCAGCAATATCTTTTAAAGCAGCAAAGACAGGTGACCACAGCCCCTTCTGCTACACCTTCACCCTCACCATCAACTCCCTCTGCACCTTCCACTTCATGCCTTTCCTCTGATCATCCAGtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCCACAGCCACTGCGTGTCCCGTCTTCTCTGCAGCAGGAGGTTGAACATACCGGTGATGAGGTTCTGCCACAGCCACCATCAAGACCACATGCGGTCTGCCATCCTCACACACCACCACCTCCTGTGCCTAGCACTTCCTCTCAGTGCAAATCCCCTGCATCACTGCCCCGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCTACCAGCTGCTCAGTCAGTACCTGCACCAGTGccctccacacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69453 lncRNA downstream 4503 2680581 ~ 2726283 (-) True trnag-ucc_9
TU69449 lncRNA downstream 54757 2672771 ~ 2676029 (-) True trnag-ucc_4
TU69432 lncRNA downstream 111993 2607752 ~ 2618793 (-) True G58648
TU69434 lncRNA downstream 113357 2611416 ~ 2617429 (-) True G58650
TU69428 lncRNA downstream 120534 2604477 ~ 2610252 (-) True G58645
TU69498 lncRNA upstream 98666 2831172 ~ 2831373 (-) True G58703
TU69499 lncRNA upstream 100172 2832678 ~ 2834631 (-) True G58704
XR_003402482.2 lncRNA upstream 112074 2844580 ~ 2853974 (-) True LOC113524008
TU69605 lncRNA upstream 297197 3029703 ~ 3084722 (-) False G58809
TU69634 lncRNA upstream 340667 3073173 ~ 3073765 (-) True G58832
XM_026910111.2 mRNA downstream 382442 2284687 ~ 2348344 (-) False greb1l
XM_026910112.2 mRNA downstream 409717 2284687 ~ 2321069 (-) False greb1l
XM_026910110.2 mRNA downstream 409717 2284687 ~ 2321069 (-) True greb1l
XM_026910091.2 mRNA downstream 518185 2204789 ~ 2212601 (-) True LOC113523983
XM_026910084.2 mRNA downstream 537893 2175540 ~ 2192893 (-) True kiaa0232
XM_034303550.1 mRNA upstream 33012 2765518 ~ 2767521 (-) True LOC117597045
XM_026910119.2 mRNA upstream 71989 2804495 ~ 2811641 (-) False ccdc96
XM_034304004.1 mRNA upstream 71989 2804495 ~ 2811402 (-) True ccdc96
XM_026910120.2 mRNA upstream 71989 2804495 ~ 2811275 (-) False ccdc96
XM_034304125.1 mRNA upstream 102771 2835277 ~ 2841271 (-) True LOC113524014
trnag-ucc_9 other downstream 4502 2726213 ~ 2726284 (-) False trnag-ucc_9
trnag-ucc_8 other downstream 14685 2716030 ~ 2716101 (-) True trnag-ucc_8
trnag-ucc_7 other downstream 20588 2710127 ~ 2710198 (-) True trnag-ucc_7
trnag-ucc_6 other downstream 24664 2706051 ~ 2706122 (-) True trnag-ucc_6
trnag-ucc_5 other downstream 49940 2680775 ~ 2680846 (-) True trnag-ucc_5
trnag-ucc_10 other upstream 9251 2741757 ~ 2741828 (-) True trnag-ucc_10
trnag-ucc_11 other upstream 18692 2751198 ~ 2751269 (-) True trnag-ucc_11
trnag-ucc_12 other upstream 49771 2782277 ~ 2782348 (-) True trnag-ucc_12
trnar-ucu other upstream 55196 2787702 ~ 2787773 (-) True trnar-ucu
trnag-ucc_13 other upstream 59367 2791873 ~ 2791944 (-) True trnag-ucc_13

Expression Profile