RNA id: XM_034303564.1


Basic Information

Item Value
RNA id XM_034303564.1
length 4271
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC113539941
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17604307 ~ 17609478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATCTGCGCGTGTGCAGTAGAAGCCAGTGGACCGTCTCGCGCGCAGACACTGTACCGACATATTTGGGTGCAATTCGAGGATCTCTTCGTGTAAAGAACAGTAAGCGGGGAAAAAATATGACTGTATGATGTAAACTGAGAGAGATCCACAGAACGAAGGTTAACGTTAACTCATCACGAAACCCTGGAAACACGCGGTTCCTCAAGATTTTCTCTTGCAACGCCGCGGGACACAAGAGACcggggttcaaatcccagtcAGGGCGTATGTGATATCCAGCCGGATCCTTATGCAAGAAGAGCTTGTGGCAACTGTCTTAGAGGCTCAAAACAGCTGCTTCATTAACGTGGTCATCCTCTGCGCCGTATAACTGAAGATGCAGTGGACCTGTAAGCAGTGCATTTTTTCCACAAATAAAAGAGGACAGTTGTTGAAACACTCGCGTGAAACATGGAGGTTTTACATGGCAACAGCCGATACCATGTCTTCATAGTGATTGCTTGTGCACATTCAAATCTTTTAATGCACTCAAAGTGCATTTATCTGTTTGGCATCCTCGATCAGACAGGCAAAGAAGTAAATCCACAGCTGCATTCCATTGCGAGTTATGTGAATACATGGAGCCCTGCATTGAAGCAGAGTTTTTCACACACTTGCGCAGTCATTTAAAACTTAAGCAAAGAGTTGTGTGTCCATATGAAGGCTGTGATTTTCAGAGCAATGTATATTCAACATTTAATGCACACAAAAGTATTATTCACGGTAGGAGTACTACACCACATTTTAAACCAGGAATAGTACACAACATTGAACAACCAGATGAGGTGACCGAAGAAGAGAATGTTTCTTCACAGGATGACTTTGACTGTGAGTATGAGGAGTCTTTGGGTGACACACACGACTTGGAAACTCAGCTGGAACGTAACCTTGCtgctctgtttttaaaaatgcagacaGTCCTGCACATATCTGAAATTGCTGCCCAAGAAGTTATACAGCAGATCAACCAGATCCATTTACTTTCAAGGCTGCTAATACAAAGTGCAGTCCAGAAGATTATCAGTGTGTTCTCAGGATTTGGTTACCAAGCGGTATATTTCTTTGGACTCTCTGAATAAGGCTATTAAGCAGTTTCCGTACACATTTTCTGATAAAGCTGACCAACCACAGATAATTCCAAAGACCTACATCTCCAAGAGAACTATCGGGGGCAATGGCCATGAAAACTGGTCTCTCCTGAGGCTCCCTCCATTGATGATAGGGCACAATATCCGAGAGGGAGACCAAGCAAGAGATACTTATGCTTCTAAAAGATATACTAGAGATAGTGATGTAATCACACTTTACTGATGAGTTAATACACTTCCTGGAATGCAAAATCTCAGAACATAGAGAGTTACTGCAGCAAACCTTTCCAACCTACAAACTTCGTccaaaacataattttattgaACACTACCCTCAAATGATAAAAATCTTCGGCCCACTAGTAGATGTGTGGACAACACATTTTGAAGGGAAGCACAGTttcccttcaggaactcgagctgcgtcaaaATGCTATGGGAACACCCCCAGCGTgacacgctctgaatcacgtgtgcagtcagtccaatggatgggcaagacgtcacgggcggggtgacgtagcgacccggaagcttaaaagcacgtACGGTGGATACAGCAgcagctttctgtcattcagcaggcgctgtgtgtgtcagtctgattTTGTATTGTCTGTCTTTCAAAGCATCATgtcaaaagcaataaaaaagacaaaacatgagggcgagagcgggcagcgttttaggctgtgtgttccttTAGCCCGCGCTATATTACGGGTGGGGATACACACGTTGGGAGCAGAGCATGCaaagtcggctctcgagggagccagCTGCCCGCATTGCGAGCGTTTGTCACTGTGTGCGCTTCGATCCCAgaaggctctctttgaggagggagccttcaccAGCATTCCTCGTGGTGCTGGCCCCGCTTCTgtcgaggcagagcggcggttacACTCGTGGGGTTCGCAAATGGATATGGTGGAGGGAATGGAAACGGGCAAGaccctttcttcttcctcacccgCCAGATCCACTGCCTCTGGGATCGGAAGCCCACTCTGCGGTCTCTTCCCCCCGGGGAGAGGGCTCGGCGCTCCGCCtgtcttcctccgaggaggttgacGTGGAGGGCGCCGATGAGGATTCACCCCCTCAATCTCCCCAGTATGAGGAGCTGTTGGAGGTGGTTACTCATGCCGTGGCCAAGCTaaacattgactggcccgccAAGAAACGGGCTGAACCGCAGAAAAGCAAGCTCGATGAACTGCGGACGTAAGCCGCCACCTCCACGCCGGAGCCTGCCTTTCTTCTCTTGGAGGAGGCCTTTTTCAGCCCATATATTCAGTCCTGCCTCTAGTTATTATGCCAGTATGCAGGGCTTGATGATCacggttacagggcgatgccccaGGTTGAACAGACGCTTGTGAGCTATCTGTCCCCCGGTgcggcatcgtccctgaaggctccggcacTGCTCTCCAAGCCGCTGcagaccacctcagcgctggtgaGCAAAGGGTACACGGCACCAGGTCAGGCTGGTGCTTGCTTGGACACCATGGTGGTTTTGTAGGCTTACCAGGCCAATCTGCTAAAAGAGCTAGATGAGGGCATGGAGATTATGTCCGAGCATGTCACCGAGCTCAGACGAGCCGCTGAATTGTCTCTCCGTGCCACCAAAGAGACCACCCGCGCTATTGGCAGGTCCATGGCAGCACTGGTGGTGTCGGAGAGACATCTGTGGTTGACCCTGTatgatatgaaagagaaggacagggtcttcctcatggacgccccgcttgCGCCTTCTGGCCTGTTCGGCGACACCATCAGTTCCGTCGTCGACAGTTTCCAGGAGGCTCGTACAAAGGCGGCagcgttccagcggttcctcccttGCTGCTCTCTAGCTCTTGGGGCTGCCGGGCAGGTGCAGCCCCCTCCATGTGCCAGCTCCACATACCAGGAGGCACAAAAACAGAGCttcgcctcccgtgctcccctgCCTCGGGACCGGAAGCCCCTGGCCCAGAGCCCAGCGATGCTCTGGGCCAGGGTCTTCTGAGGCGAAGCCAGATCTGCGGACCGTTCTTCTGTCTAAGAAGACCTCGGCCAAGAAGTCCTGGTGCTCGTGGCCCAGGACTTCTGAGGGCAGGCCCCTCTGGGGAAGAACGGTGTACACCTCATCATATGGTGCccgtctctcctcagtgccctcGGGAGATCGACCTGCCACccatggtgcttcagggcacaGCGGTCTCCATCGAGCGCTTCTCTCAGTTTCCGCCCGGGAACGTGGCGGTACTGGGAGGCTCGCTGCCTCTTCGGAGCTCTTCAGAGCAGCTAGTTTGGCCGTCCCCTGCCAGTCCGCAGCTTCAGGGCACCGAGCTAGCCGCTctcattacaccagaggtcagtctcgagagactgattcccttagtagacTATTTTGcggcgtggaaacttctgccaaatgtgtctcaatgggtcctgcatactgtagagagaggctaccgaatccAATTCGGTTCTCCATGGCCTCGTTTTTgcggggttcttcccactctggtggaccccgagcaggctctggtaatggaacaggaagtaaacactctcctgaggaaggaggccatcgaggtggtccctcctcatgacagagagtccgggttctacagctGGTACTTCATCGTTCCGAAGAAGGGTGGAGGGTTGCGTCCCATTTTAGATCTGCATCATTTGAACCGCTCAGTCATGCGACTGAAGTTCAAGATGCTCATGATCAaacaggtcgtgtctcagatcaggtccgaggacgggtttgtcacgatcgagaaaagtgtgctttctccagtacagagaacCACAACCACTGTTTGTGACTCAGGAGAcatcgcactgtcccctctggttctctaTGACTCATCTAGCTCCTCTCGGACTCGATGCCATGGTACAGACttggccgaggctgcgtctgtacaCCTTTCCCCCGTTCTGGAGAGAGCGTGCTGGGACGGGGTCCATCTGTTGCTAGTAGCCCAGTTCTGGCCGGGCTGAGTATGGTTCTCAGACCTGACTTCTCTTCTCGACGGCTCTCCATTGGAGAATCCCGTCAGGAGGggtctcctctcacaggcggggggcaCCATATTCcacccccgcccggagttgtggaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78323 lncRNA upstream 25361 17577104 ~ 17578946 (+) True G66124
TU78089 lncRNA upstream 101662 17410994 ~ 17502645 (+) True G65933
XR_004577991.1 lncRNA upstream 119385 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA upstream 119385 17457745 ~ 17484922 (+) True LOC117597048
TU78090 lncRNA upstream 163935 17431077 ~ 17440372 (+) True G65934
TU78333 lncRNA downstream 20106 17629584 ~ 17634867 (+) False G66128
TU78365 lncRNA downstream 39887 17649365 ~ 17651710 (+) True G66144
TU78379 lncRNA downstream 93756 17703234 ~ 17703455 (+) True G66151
TU78387 lncRNA downstream 130597 17740075 ~ 17747165 (+) True G66159
TU78431 lncRNA downstream 163075 17772553 ~ 17775309 (+) True G66179
XM_034303563.1 mRNA upstream 18011 17573590 ~ 17586296 (+) True LOC113539911
XM_026936048.2 mRNA upstream 80968 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303569.1 mRNA upstream 84141 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA upstream 84141 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936030.2 mRNA upstream 103411 17487423 ~ 17500896 (+) True alox12
XM_034303570.1 mRNA downstream 14 17609492 ~ 17614348 (+) False LOC113539940
XM_034303837.1 mRNA downstream 7681 17617159 ~ 17620019 (+) True LOC117597112
XM_034303567.1 mRNA downstream 28070 17637548 ~ 17642740 (+) True LOC113539967
XM_026936060.2 mRNA downstream 45842 17655320 ~ 17664976 (+) True nat16
XM_026936069.2 mRNA downstream 64070 17673548 ~ 17681486 (+) False si:ch211-196f2.6
XR_003404112.1 other upstream 842432 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 842660 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 842969 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 843200 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 843488 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 226 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 154983 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 390680 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 503966 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 587834 18197312 ~ 18208564 (+) True G66492

Expression Profile