RNA id: XM_034303567.1


Basic Information

Item Value
RNA id XM_034303567.1
length 1750
RNA type mRNA
GC content 0.38
exon number 11
gene id LOC113539967
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17637548 ~ 17642740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagacaattctcttacaaccactagtgattctgccacaacagctgagagttcggaaacaaccacagacaactctcttacagcTACCCCAGATGCAACCGTAACAACTAGTGACTCTGTCACAACAGCAGAGAGTTTGGAAACCACCACAGAAAACTCTCTTACATCCACATCAGCAGCCACAACAACAGATGCCACAGAAAAAACCACTATAACTCCAACTACAAAACAACCTGTATCATGTCAAAATGGTGGAACTCCAACAGACAATGGCTGTTTCTGCGCCCCTGGTTTTATAGGAGGGTATTGCGACAGTGTTGTATCTGAAATCACAGGTCCAAATAAAATTGAAAGGATAGTCCTTGCTGACCTAGacataaacaaaaattatatcgctgaatacaaaaatacatcctcaaaagaatataaagattttgtgCAAAACTTCATTTCACAGATGACACCATACTACAAAACCAGGATTGATAACTTCTCGAATATAACAAATGTAACACTGAGTGAAGGAAAACCTTTCAACAGCCGAATGCAGAGCAAGTGGATAGAGAAAGCACCTAAAAGTGTGAATGTTAAGCATGATATTGTTGTGGAAATTGAAAACTATGCTAGTGAAAAGTATGACAAGCTCTTTGTGACCATCCAAGAAGCTGTTCAATCACTTACAAATTGTACTCCCACGTCAAATGCCTGCCCAAGCTTTACTGTTACTGAGGTCCAGGTCAACAAAACTGAACTGACTGAAAAAGAGTTCTGTGAGCAAGTTACAGCAATGCTTCCTGAGGAGTATCGTCACTATTTTTCTCCCGTTACTGTGCTGGGCAAATTAACATGTGTCAATCAATGTCATCGTGATCATCCTTCTCCAAAGATCTGCATGAACAAAGGTACCTGTGAGGTTTCCAAGCAAGGACCAGCCTGCTACTGTCTTCACTCAGATGCAAATTGGTATCTTGGAGAAGATTGCAAGTACCAAGTTCACAAAGTGGGCGTCTATGCTGGAATGGCAGTTGTCACTGTGGTTTTAGTATTAGCTGTAGTGGTGTTTTCTGCATATGTCTTGCTTAATAAAAGGAAACAGAAGAGGAATAAAGACAATAAGGAAGCTCTTGTGAATCAGTGGATAGATGATGACTTTGAGTGGCCCTCACAAAAAAGATCAAACGAATCTCATTCAGTGGTTGATGAAACATATGATAATCCTGCACAGTCAAATGAGGAGAATACCAGCCAGAATACCACACCTCATAGAACAGCCTCTTCCACCCATCCTTCTTCCCCCCAATTCAACTTGCCTCAAAATGTAATTCCATTTCAGTATCTGGGCAGCAATCACCCTATGAGAATCAGCAAGCCTCAGATCCACACCTCTTCTTCAAGGCCAGAAATATATAACTTTGATGTATGATATTTAACATcatcacacattcacaaaacTAAAAACTACTGTTAAAAATTGTTTGCCTCCACAGAGAAAAGCATTAAAATACTCTAGAGAAGgtgattatttttgctttttgctaCAAATTCCACAGATCATTCTAAATACTtttatactattttttatttacatattgcattttgcattttgatagctaaaaataatgacatgatGACAAGACATAAGAAGCCCTTTTGCTAGAACACAAgcatgaataaaatacaaatttcatgttttacttgaaaaaatctttaaaaatcttACAGTATATGTTTAGACTATATATCTTTGcacta

Function

GO: NA

KEGG:

id description
K22016 MUC3_17; mucin-3/17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78331 lncRNA upstream 2681 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA upstream 2681 17593632 ~ 17634867 (+) False G66128
TU78342 lncRNA upstream 2681 17593632 ~ 17634867 (+) False G66128
TU78336 lncRNA upstream 2681 17593754 ~ 17634867 (+) False G66128
TU78339 lncRNA upstream 2681 17593754 ~ 17634867 (+) True G66128
TU78365 lncRNA downstream 6625 17649365 ~ 17651710 (+) True G66144
TU78379 lncRNA downstream 60494 17703234 ~ 17703455 (+) True G66151
TU78387 lncRNA downstream 97335 17740075 ~ 17747165 (+) True G66159
TU78431 lncRNA downstream 129813 17772553 ~ 17775309 (+) True G66179
TU78468 lncRNA downstream 230659 17873399 ~ 17877074 (+) True G66214
XM_034303837.1 mRNA upstream 17529 17617159 ~ 17620019 (+) True LOC117597112
XM_034303570.1 mRNA upstream 23200 17609492 ~ 17614348 (+) False LOC113539940
XM_034303564.1 mRNA upstream 28070 17604307 ~ 17609478 (+) True LOC113539941
XM_034303565.1 mRNA upstream 28070 17604307 ~ 17609478 (+) False LOC113539941
XM_034303563.1 mRNA upstream 51252 17573590 ~ 17586296 (+) True LOC113539911
XM_026936060.2 mRNA downstream 12580 17655320 ~ 17664976 (+) True nat16
XM_026936069.2 mRNA downstream 30808 17673548 ~ 17681486 (+) False si:ch211-196f2.6
XM_026936067.2 mRNA downstream 30810 17673550 ~ 17681486 (+) True si:ch211-196f2.6
XM_026936056.2 mRNA downstream 51908 17694648 ~ 17698271 (+) True LOC113539928
XM_026936057.2 mRNA downstream 51908 17694648 ~ 17698271 (+) False LOC113539928
TU78354 other upstream 17469 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 875673 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 875901 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 876210 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 876441 16760981 ~ 16761107 (+) True LOC113540745
trnat-agu other downstream 121721 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 357418 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 470704 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 554572 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 1213716 18856456 ~ 18858652 (+) True G66864

Expression Profile