RNA id: XM_034303599.1


Basic Information

Item Value
RNA id XM_034303599.1
length 5567
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC113539871
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9649304 ~ 9707936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctccctccctctatgtgtgtgtgagagagagagaaatttccGCTTCCTGCATTCACAAACCCTCCGCACTGTCTCGCGCAAACACTCCCAGGCAggcttacacacatacacacacacgcacacacacacacgcacacatccgCTGTAAGTGCGTTATCCCGCAGATTGCGGGTGCCTGTGCTCGCCCTGCAGGACCTATTTGTGGATCTGAAAGCAGACAGAAGCCCGGCCCGGGTGTCCAGCGGCTCGGCTGTAGAGCAGCATGTCGGAGCGCGGAGGAGGGCTGCCGAGGAGCGGAGGCGCGCCGTGTCCGTCTCCGCAGCCCTCCAAGCCGGTCGCGATCACCTCCAACCGCCCGGTGCACATGAACCTGTACGCGACCTGGGAGGTGGACCGCTCCTCTCCGAGCTGCGTGCCCAGactCTTTAACCTGACGCTGAAGAAGCTGGTCATGCTAAAAGAGCTGGATAAGGATTTGACGTCTGTGGTCATCGCTGTTAAACTCCAGGGGTCGAAGCGAATCCTCCGCTCCAACGAGATCTTATTGTCTTCAGCTGGATTGACAGAAACGGACTTACAGCTCACGTTCTCCCTGCAGTATCCTCACTTCCTGAAGCGTGATGCAAACAAACTCCAGATCATGCTGCAGAGGAGGAAGCGCTACAAGAACCGCACCATCCTGGGCTACAAGACCCTGGCTCTGGGTCTCATCAACATGGCCGAGgtgatGCAGCACCCTACAGAAGGAGCTCAGGTTTTGGGTTTACACAGTCAGCTGAAGGATGCATCAGTTCCTGTGGCCGAGGTGCGAGTTTACTCTCTCTCCAGCCAACCGATTGACCACGAGGGACCCAAAGCCAAGATGAacgATCGTTCTCCAGACATCGACAACTActcagaggaggaggaagagagttACTCATCAGAGCAGGAGGGGAGTGATGACCCGGTTCAtggacagTATCTGTATGACGACGATGACGAGGTGAGAAAGAAGAAACCTCGACGTAAACTGGTATCCGGGGCGGCCATCACTCgaCAACCCAACATCAAGCAGAAGTTTGTGGCCCTGCTGAAGAGGTTTAAAGTTTCAGACGAGgtcggTTTCGGATTGGAGCACGTCTCAAGAGAGCAGATCCAGGAGGTTGAGGAGGACCTGGACGAGCTCTATGACAGCTTGGAGATGTATAACCCAAGTGACAGTGGTCCAGAGATGGAGGAGACAGACAGCATCCTGAGCACACCCAAACCTAAACTcagGCCGTTCTTCGAGGGAATGTCGCAGTCCAGCTCTCAGACGGAAATCGGCAGCCTGAACAGCAAAGGAAGTCTGACCAGAGACCCCTTCAGCCCGCAGGGGGAGCAGCCTCCTTCTGACAAGATAAAACACTCACGCAGCCGCAACCTGGACGAGACGACGACCGAGCCGGACATTTCGgAGGTGATTGATCAGGAGCTGTTCCCGGAAGCGGCACCCTCCATTACTGTGTCTGTGGCTGAGAAACCACGTACACCACTGAAGACCAGCAAGAGCGAGGGGCAAACCATGCCTTCTCCTAggttggaTGGGACACACACACCCCGGCAGAAACGCAGCACTCCAATGAAGGAGCGGCAGCTCTCTAAACCGCTGAGCGAACGAACCAACAGCTCAGACAGTGAGAGGTCACCTGAACTAGGACACAgtacacaggtcctcAGGAAAGCTGTGTATGATCAGTTGAATCAGATTTTGTTGTCTGATGCAGCGTTACCCGAGAGCCTCGTCCTTGTTAATGGCACCGACTGGCAAGGCCAGtatgtagCAGAGCAGTTACAGGTTCAGAAGCACCCGGTGGTGTGTACGTGTTCATCAGCAGAGATTCAGGCCGTTCTCTCAGCTGTGCTGACGCGCATCCAGAAGTTctgtaactgtaactcGTCCATGCCGCGGCCCGTGAAGGTGGCAGTAGTCGGAGCTCAGAGTTATCTGGGTGCCATCCTGCAGTTCTTCGTCAGTCAGCTGGCTAATAAGACGTCTGATTGGCTGAACCACATGCGCTTCTTGGTGGTTCCTCTGGGTTCCCACCCTGTTGCTAAGCACCTGGGTGCCCTTGACAACCGCTACAGTTCAGTTTTCCTAGATGGAGCATGGAGAGAGCTGTTCAGTCGCCCAGAACCTCCACAgtcagacatgtTGGACGTGGCGGGTCGTATCGCTCAGTACATCAGCGGAGCGTCTCTCACCCATCAGCTCCCCATAGCTGAGGCCATGCTGACCTGCAAACACAGGACGCGGGAGGAGGATTCCTATCAGAAGTTTATCCCGTTTATAGGCGTTGTGAAAGTGGGGCTGATTGAGCCGGGTCAGTCGTCTACAGGTGATGCTGAAGAGGGCGTGTCTGTGAATTTAGCTGTCCCCTCTACATCTCCGCCCACTCACGGCTCTCCTGCCAGTCTTAAAGAGACAGCCACGCCCCCTTCGTCACCTTCTATGGGTGCTGTTTTACCTGCAcagggGAGCCCCAGCATGTCTCACGGTGTGGACGCTATCGGTCTGCAGGTGGACTACTGGCTGGCGTCTCTGGCTGAGAAGCGGCGTGAGGGCGAGAGGAGGGACACGGGCTGTAAGAACACTCTGAAGAGTGCGTTCAGGTCCCTGCAGGTCAGCCGTCTGCCTGGAGCCAGCGCCAGCGAGCCTCACGCGCCCGTCAACACCATGTCCATGACCGTGGTCACCAAAGAGAAGAACAAGAAAGTGCCGACCATTTTCCTGGGGAAGAAGCCGAAAGAGAAGGAAGTGGACTCTAAGAGTCAGGTGATCGAGGGCATCAGTCGACTCATCTGCTCAGCCAAGCAGCAGCAGACCATCCTGAAAGtgtCCATTGATGGTGTGGAATGGAACGACGTGAAGTTCTTCCAGCTCGCGGCTCAGTGGCCGACGCACGTGAAGTACCTCCCAGTCGGACTGTTCGGTTACAGCAAGCCGCCCTCCTAGGAACCGCCCACTCATCCTCTAGCCCCGCCCCTTCACCCCACTGCAGCAGTCACCCCATTGCACACAGCTGTAGCAGGGCTGTAGGAGGGAACCTGCCTAAACGTTCATATCCTTTCAGAGAGGAGGTGTGTGGGCTCGCGTGTGGGACGTGTGGGAGTGGCTCAGACGGACTTTATATGGCGCTAGTCACTTTTATTTCCAGAAAGGTCCCCGAGCACCAGTAGCGTGGGACGAGCACAAAATGGTAGACGCCTTCAGTCTACCAGCAATCATATACTTGTTACAGAGCATGACGAAAATAGAGAAATCCAAAATATGACCCCTcacatgacctttgacctacATGATTGGCCCCAGTATCAGAGTTTTAAGAGAACCAGCAAACGGTGTTAACCGCTGATCTGCATGTTTTAAACTACAACACCCACAATCCACTAGGAAAATTAGTGTTATTATGCAACTTATGTACTTGTGCATGTGTTAAGCTGTGCGAGCCGTGCAGCTACAGTTAGCCACTCGAAGCTATGCCTTTTCCACATCAGTTCAGTCTAGAAGCTTAGGATTAGCAGTGAAGTGGTTGCTGTGTTCATGGACTCTGTGAGTTTTCACTTATTTTGTACATACATTAGGCTTTTGCGTCTTAGTTTTCAGTTAATATGAGTAATTACAAAAGTGGCCTTTTTAGAACATGTAGCTCAGTtaagggttttatttatttattttttcctttatgaGCCATTTCTCCAAAGATCACACTGGCCAATCCGAATGTAAACTGTCATGTAAACCTGATCGAATGTAACAGGGTCACAGAAAGTCAGCATGGATACTGCAGCAATGACCAGCACTTCATTTATCTCCTGTAAAACGCTACATCCTGAGGGAAACTGCGCTCATATCGCACGTCTCATGTTTGTGGAATTAAGAATTAAAGCTAATTTACAGCTCGCTTGAAACTGTCTGTCAGCCAGCGCTGTTCTCACGAGCATCTTCAGCAGATTTTTGAAAGCTATGCATTTCCATTTACGCTCTCACATATCACACACGTTTACCTGTGAAGCACAATGTTGGAGGTTAACTTACCCCTTTAAAGCGAACGATGAGTGAACGTGATCATTGCCAGTTAGCATGCTGTCACTGCTGgtgtaaattattcatttaaagggatattccacacacacacacacacacacacacacacacacacacatatgtgatTCTTCATCATTAACGTTTACAGGGTGTTCATTTGAAAGTGGAAGATTTACCAAGCATAAGCAGGTATAGAAGTGAATGAGTGATCACATGACATGTTAGTTACAGGTTATGAAGTTCAATGAAATGGTTCCTCTCATTTTAAAATCCTTCAGGCTGATCTACAATCATCCAGGCAAAATATTTGACCACGAGAGCAGAGACCtgtttaaatttgttatttaatggtGCAATAGTTGTTCAtatcttactagtacaaataatatGGAACATGATGTAGAAAAAGTAATACtttaagcttaaaaaaaaaaacagtttggaaaCCTGCCTTCTGGTccggaattttttttttttttccccatatattTTATTGGCCTCTCttatcagtcattttatagccaCGCCCCCAATGCCCCTTCCCGTCCTCTTAAATCATTATGAGGAGAAGTTGCATATTTATAAAGTTGTTATTCTGGAAAGCTTGCGACGTTCCCCAGTTTCTGCTGTTCAATAAACTTAGCTATTCTGGAGCAGGAACTAAAATGGTTCCTGGAAGTACAGCCCAGGAATTAAAACCGATCCTGGTTCCTATGGTGGAAAATTCCTGAAAAAAGCCTTAGGTGCAGTTCCATTTTTTGGCAAACTGCTGctgtataagagaaataatacACTTCTAGATGTGATGGTAttggaaaataagcaacttcAGGGCATTACAACTTGCTGAATTGAGCCAATACGTTTGTTCCTACACACAGATTTgatctctttcattcttttccttATAAGGAAATGACCACTCATTTGCTTTAGGCTACACTGGTTCTCTGTAATGTTTTTCATGATCAAGAATCACATGCAACACGGTGTGGATTGCTCTGTTGAGAGCAGATCAAATTGAAGAGCTGTCATTATCAGTCTTAAACATAAAGAGCTAAGAGCTGATGCTGACTTTCAGTCTGAAATCATGGAGCTACAGTCTCCCTTTACCTGCTAAGCTGCTACATGGTTGTCGTAAGGTGCAGCTTCTGTGAAAGTGATGGTCTACTTTGTCTAGGACGTGTGTCAGGTGTACATGTTGGTGTTAAAGTGATAAAAGTTTTAGTGTGTGAAATGTTCTGAACTCTGAAATAACGTTGTGCCACAGTAAAGAGTGATGAGTCTTggtgtgtggatgtggatgtgtggatatacgtgtgtgtgtgtgtgttcttttgcGTGGTCGATTAGCAGATTTGTGGTGTAAATTTTTGACGGTATGCCGACTCCTGCATCATGACGCAAGATCACATGAGACACGTTGGCGGTGCTGGAGGAATTTCGAGGCATTTCGTAAagaatttaaatgcaaaaaaaaacaaaa

Function

GO: NA

KEGG:

id description
K23290 PACS1; phosphofurin acidic cluster sorting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73000 lncRNA upstream 56561 9578364 ~ 9592743 (+) True G61638
TU72958 lncRNA upstream 193144 9449043 ~ 9456160 (+) True G61600
XR_003404086.1 lncRNA upstream 299590 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 306190 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 307332 9341759 ~ 9341972 (+) True LOC117597225
TU73062 lncRNA downstream 173132 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 173132 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 206299 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA downstream 206299 9914235 ~ 9917378 (+) False G61696
TU73126 lncRNA downstream 316649 10024585 ~ 10041759 (+) False LOC113540370
XM_026937201.2 mRNA upstream 7394 9627748 ~ 9641910 (+) False sf3b2
XM_026937200.2 mRNA upstream 7394 9627749 ~ 9641910 (+) True sf3b2
XM_026937204.2 mRNA upstream 214700 9428725 ~ 9434604 (+) True pnp5a
XM_026936309.2 mRNA upstream 316522 9329335 ~ 9332782 (+) True LOC113540089
XM_034303888.1 mRNA upstream 657852 8987729 ~ 8991452 (+) False LOC117597148
XM_026936838.2 mRNA downstream 4647 9712583 ~ 9723961 (+) True LOC113540385
XM_026936840.2 mRNA downstream 4647 9712583 ~ 9723961 (+) False LOC113540385
XM_026936839.2 mRNA downstream 4647 9712583 ~ 9723961 (+) False LOC113540385
XM_026936841.2 mRNA downstream 4647 9712583 ~ 9723961 (+) False LOC113540385
XM_026935803.2 mRNA downstream 16793 9724729 ~ 9746048 (+) True LOC113539763
TU72678 other upstream 752575 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 924864 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1586465 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 3052743 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 3218727 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 50524 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 99385 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 152958 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 152958 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 204461 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile