RNA id: XM_034303603.1


Basic Information

Item Value
RNA id XM_034303603.1
length 6792
RNA type mRNA
GC content 0.49
exon number 20
gene id rbm33a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28443778 ~ 28468852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACTGGTCCGCCATGTTTGTGTATGACTTCAGCGCCGTCTTCACATAAATACACTGACTATCCACATCAAGTCCCAGAAACACCCCGATAGCATCTGTCCCAATGCACTAATCCACAgtttaaaggaaataaacacCCTGAAGACATTTGCCGTCCTCTGTAATGGCGGCCAGCGCCCGAGATGAGGAGTTTGATGAGTATGATAAACCGGGAGCTGAGAGATCGAGGAGGCGAAGAGGAGATGATGATGACCTGGACAGTGATTTCGAAGGCGACCTGCTCGAGGAGGACTGGCTTTCATCCAAGAAGAATCCGTCAGAGCTGTCAGACGAAGAGCTTAACGACGACCTGCTGCAAAGTGACGAGGAAGACCAGAACACGAGtgcgcAGGGTGCAGCTGTGAGCCTGAACGCGACGTCGGGTCTCAGCGAATCTTACGAGCTCCAGGAAGGAGATGAATACGCAGCGGAGGAGTACGGCGTGacggagggagaggaggaggaggagtacaGGGCAGACGAGTACGGAGATGACGAGGGAATGGAGTACAACACGGGAGGAAACGAAGACGAAGTGCTGGACCTGCAGATCAACGAGCCGCTGGATGATGAATTTCAAGTCGAGGACTACGGCGCTGAGCCCCAGGAAGTGCAGCCTGACCAACAGGAAATGACTGAGGCGGAGGGGGAGGAGCCTGAGGAGGAAGTCGAAGATGTCTCCCAGGTTACAGAAGCAGAGGAGATGGAGGCCGAAGCCGAACCTGAGACCGAGACGAAGGAAGAATCCGACGAGGACgaagaggatgatgaagaaTCCGAGCGGCTGCGGTTCAAAACCGAGCGCAAAGACAGCACCGTGGTCCGTCTCTCCGACGCCACCAGCAAACGGCGGAACATTCCGGAAACGCTGGAACTGACCGAAGAGGCCAAAGCGGACCTGCTGGAGTTTGAGGAGAAGGAGCGGCTGAGGAAACAAGGTCGCTTTGGTGGacgagggagaggaggaggggtaggtggaggaagaggaggaggacctCCCGCGTTCGGGATGGGAGGTTTCCGTAAAGACGGAGGCGTAGGAAGAGGGCGGATAAACGAACACAGACCTCCACTGATGCCAATGAACTTAGGCATGCAgccgaGAATAATTCCTCCTCAGTCGCATCGTCCTCAGCCGCGCCATTCCGTCCAATGTGGAGGTCCCAGTCTTTTCCCCACGCCGCTCATCCCGATCCCCCAGCAGCCTCTGCAGTCCCTGATGCCTCCGCGCTCACCGGCGCTGCACCAGAGGCCGCAGCAGGACCTGCAGCCGCCGCGCCCTCACGGACACCCACAcgcacttccacacacacactccaaccagcagcagcaccagcagcagcagcccaAGAACATTCACATCAACCCACATTTCAGAGGGCCGTCGTCGTCCTCACCTGTGCACGTTCCGTTGGTATCATCTGCCCCAAATCAGCCCAGACCCAACCTCGGCCCTCAGAGATTCCCGGGCCCTGTGGATTTCCCGCAGCACCTCCAGGGTAATTTCCTCCAGCCTCAGAGACCCCCGCCTCAGGAGCAGTGGAGAggaccaccaccacctcctcaCCAGGAGAGGGAGCCATTCTACAGCAACGAGCCACGTTTTCCAGCCCAGCCCCTGTTTGATCTCCCAGGCTCCGCCCCCCTGTTGAACAACAACATCCTCCCTCTGTCCTTCCCTCAGCCGGGGCCGGGGTTCTGCCCCCCGGGCGGTGGAATGTTCCAGAGAGACCTTCCTCCTCCTCGCCACAATCTGCCCCCCCCTCAGCCTTCTCCTGCCCCGCCTGCGCCCCGCGGTTTCATGGGACACAGACAGCCGTTTCCTCCACAGCAGCACAACGCCCCCTTCAGTCCTCAGCACGGGCCATTCGGcatgcagGGCCTAATGCAGCCACACCCTCAGCCGCAGCACCACGACCCGCCCCTACCTCCGCATCATCACTCAATGCACCAGCATCAGCACAGACAGGAAATTCCTCCTCTGCCTCATAATCAGCATCACCAGCATCAACACCAGGGCCAGCCTGGGCAGCAGCATCCCATCATGCACCTCTCTCAGCCGCCCTTCCGTCAGCCCATTCAGGGTGGACCTAGACAgatgaagccccgcccacaaaaCAACATGGGTCACTTAAGAATGgGGTCACCTTCGTCCCTGCAGCAGCTCCAGAACCTCCCTCAGCGCAACAGTAACCTGCGCGAGCTCCCCATCGCCCCCGGCAACAATGACCCCGTCCGCCCCCCTCAGCCTAGGCCCATGACCAGGGTCACCCAGAATGCCCGGCCTGGTCAGGGGATTGGGGGAGGAGCCATTGGACGAGGGCGGGGTCTTGCTAAACCTGCCCCGACTCCAGGCGCTTCAGAGATGAAGAATGAAATACCAGCCCCACAGACAAGCACACCTGTACAAAAACCAACGCCaaacacacctgcacaggatgaggatgaggacgaGGAAACGCGTCAGTACCGGCTGAAGATTGAGGAGCAGAAGCGACTGCGTGAGGAAATCCTTAAACGCAAGGAAATGCGCAGGCAGATGCAGGCCGGCGCGCGCAAAAAGGAGCTGCTGGAGCGCCTCGGGGGCCAAGTAACACCCCAAACAACCCCCATGCAGACTCAAACCACCCCGACTCAACCCCAAACCACCCCAACGCCCCCCGCCGCGCCCCAATGGGTTAAATCCCGCCTACAGAACCCCAGCGTAGAGCAAAAGCAGCGTACGCAGAACCCACAGAGACACGTTCCACAGCTCCAAAGTCCCAACGTCAACGCCACGGCCCCTCCAGAGGAGAACAAGATCACACCGATCCAGACGCAAGCTAACGCTGTGAGGAAGAGGACCATCATGCAGCGCGTTAACACCAGCGGCTCGCCTCAGATCCCACAAAAAGTGCGAGTTGTTAAACGACTAACGGGCGGAGAGGAAGCTCCGCCCCTCCAGAATCAGCCGCAGCAAATGATTGGTCGAGCCGCTCCTCAGCAGAGACTGAGCGCCGTCAGGAAGGTCACGGTGGCAACAGCTGGACCACAACAACCtccgcagcagcagcagcagcaacagcagcagcagcaacagcagcctGAAGTGAACCAGAGTAACCGGGTGGTGGTTTCGGGTCGGGGGCGTGGTCGTGGTGCTCGTGGCGGTCGGGTGGCGCCGCAGAACAGGCAGAATACCCGAGCTGCTGAGTCTCAGCCCAGCACGGTGTCTATAGACGGCCTGTCGTCCTCTACCACCGAGAAACAGATCAAAAACCTGCTCAACTCCATCGGCCCCATACAGATGTTTAAGATGATGCCGCAGCAGAGGAAAGCCATCGCTACGTTTGTGAATCCTCAGCACGCTCTGAGTTTCCAGCACAGCTTCCACAGGCACATGATCGATCTGTCCCACATCGACGTGACCATTATCGACGGCTGAGGATCGGGCGAACGAGAGAACGATCAGCACAAAGCCGAGAGATCGAAGCAAGCTCCTGGAATCAAGGCCGTGTTTTACTCTAAAGCTCTCAAAACACTAAAGCAAGTTTCAGAGGAACTAACGGGAGAAACAATGGCAAACGACTCGGATTTAATCATCCATGGTTTCACTGAGAGCTGCTGTTCCTGCTTTGTGTTACGTACTCCACTGATAATTCCCAAAACTGAGTCAAAGGTGGGGAAGTCGCTGTGACTGTAGACACGCCGtttactgttattgttattattattattttttctttcgaCTGATTGATCAGTAAGTGAAACGAGAGAAAGGCTGTTTTTTTAAGCGAACCCGTGTAGTCAATAACGATGACGCACGATAATGGTTGCTCCCGTCTTCGTATACACTTTTAAATACACACTCCTGGACAAGATTTCCATTTCCTTGAGATTGAAAAGCAGGCTGGAGCTGTAGTCTTTGccaccactagagggcagcatGCGAGTAGAAACCACCATAAGAGATTTGTTCACACGTAATTATTGAATAATTTACGTAATTCGCTTTATCTGAGGTCATGAAGTATGTGTAGTTCATCTTTCAGCTCAGGTCACACTTTACGATCCCATTTATTACAATTAGCCAATATATAATCAGCTTTTATTAgaaaggttttattttggatCTCTGATTGTAGGTTTAAATATTAActtgctatttattttattatcataaaTCCTCAATGGCTAGTTTTCCAGAACGGCTAAAAATTCAAATGTTCATATTTCTCTCGTTTTCCTTTCATGAAATAATTGGCagtaagttgttttttttttgtttgtttgtttagatttaTCCACTTAAATGAAAATAGTAAAAACACACCCGCGCTTCGACGTCCTGCTTGCGCTCCATAAAACGTGCGGTTGTATTGGTCTTGCGAGAACGTCGTCGTCTTGGCTTTTCCAGTTACACTGCAGCATTTCCAGAGTGCTTGAACATACTAGCATCTTAGCATTTGATCATTTTGGATAGGCTAATAGCAGCAAAGCCACAATCTGAGAGTTTGTTAACTAGCGTTGTGTGTAATTAGCCGTAGTTTCCTTTCTGGTTGTTAGATTTTGGGACCACAGTGTCCTTTCGCTCTCGCTCATGGTTTTCTCTGAGGTATTTTTTAACGCTAGCTGCATGCTGTGTCGTAATTAGCCTATACAAGTCGATCTTTTCTGCTCTGATCAGCTATAAAGAGGTTACAGTGAGGCATAttaacagtttttttgttttgctatgTCCTAAACTTTCAGCACATTCCCCCAGATTCCCCAGTTTGAAGGAATATTAGACTAACACTGCTAATTTCACTCTAGGTCTTTGAGTTTCCTTCATTTCTTCCACTTTAGCTATGCTAACAGTGTAATGTTTACAACTTCCTCGTATAATTCACAGCTAGAGCATTAGATTTCAATAAGATTGAGTTCTAAAGTACACTTGGCTTTTTTTCCGCTCAGTTTTCATCTCTTGTTACATCCAAACATTGTGTTTGCGTCTGCGTCTGAAGGATTGTTATGTTATGCTAGCTCTGTGCTAACCTGTATAGATCAATTTGTGGAGATTTTAAGTGGTTAGGGTTTTTTTCTGAGGTAAAAATGTCCCTATTTTTATCAATTTGTTCACTGTGTTGCTTCAGTGCGCTCCTCCATTTCCCAAATTTGAAGGATTGTTATGCTAGCATTGCTAACTAGCGTTCTAGCAAATATAGatcagtctttctttctctattcctctctctctctttctattttctgtTCTTCATTATGTTATCTTTAATGGTCGCTTTTATTATGATCTGCTTCCTGTGCTACTTCCCAGTTCCCTCAGTTTCTCATTGGGAGTCTGAGGGGTTAGCTTGCTAGCATTGCTAACTACTTTGAGGTAATTATAGATCAGTCTTTATTTTTCCCCCGGACTCTTGTGGTTTTAAAGGCTGGAGTTGTTTTGAAGggcattttcattctttttccatTTAAGTCCAGGCATTTAGCGCTTCAGAGTCATCAGGATTGAAGGTTTGTTACGCTAGCTTTGCTGATTAGCGTTGTGAGTGAACACAGATCAGTATTTTCTCCTCACGGATCCTGAGTTATGATATTTTCCTCAGCTCTAGATGGatgtttcattacatttttttccattttcgcACAGTTTCCTCAGCGTGTGTTAGCTAGCGTTTATTGCTAACTAGCGTTGTGGGTGATTACagctcgttttttttttcctcatgttgtGGTTTTTAAAAGTATGGATGTGTTTTGTGCTACATCACCGCACCATTTCCATTGAGTTATTTGCGTTTTCACCCAATTTCCCTAATGTGAATGAATGCAACTTTCTATTTGCTTTTTCCGATTAGCATAGATGCTGCCCTCGTCCTCGTTCCTCTagcattaattattcattattcctCTATTCTACGCTTGTCCAGGAGTTGCTGTGTGTCGGGAGCAGCCGCTATCAGTGCTCACGCTTATGTACATAAGACGTGGCTACATTAGATATTTGAGGAACACCAACTCTAAcagtgggtgttttttttttttgttttgtttttttttctttttccctttcctCCCCCCTGATTATAATTGTcagaatttcttttttgtaCTAAACCACATCACTGCTGGATTGTTTTACACATTCTGTTTAACGAAGCACGCTTAGGCCAGAGGTTTATCTTTGGCAAGCTTATTATTTGAAGAcgttttaaagattaaaaaaaggaaaagaaaaaagaataaacgaTGGTCATGTGTATACACTGTAATGATACGTATGTGCAGGCGGTTCACTTTAAAGGTTTTCTGTATgcgtgaggggaaaaaatgtctgttttccTCATTTCACCATCTTAACTTCTCCATCCAGGTGTTTTGGGTTTAAGTTTTgcgaaaaaaaaatactttttgaaTTTTGCCAGCTGatgtttttagatgtttttttgttagatTCTTAAGGCACTTTTTTCGGGTGACTTCTTGAGTTCTTTTTTTGAGCTCGGActcaaagaaatatttttttctcctgaatGCATGAAAAAATTTGAAACCTAAACAAGCTAAAAGTCAATACTGCTTTCACAtttggccttttttttgttCCCTTTTTATATaagttagttagctgatactaGCTAGGAATGGTAAGagtgttgctatggttacagtgtgcacgagtgttgctatggttacagtgtgGTTATGTTACGTGCTCTGGGcagctattttcttttttttttttttttttttttttttgagggaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K25078 RBM33; RNA-binding protein 33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85711 lncRNA upstream 60370 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA upstream 115597 28316404 ~ 28328181 (+) False htr5ab
TU85674 lncRNA upstream 321636 28114451 ~ 28122142 (+) True G72276
TU85626 lncRNA upstream 431319 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 884351 27556204 ~ 27559427 (+) True LOC113540592
TU85742 lncRNA downstream 96 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 106070 28574922 ~ 28578950 (+) True G72378
TU85820 lncRNA downstream 150972 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA downstream 154388 28623240 ~ 28627973 (+) True G72408
TU85843 lncRNA downstream 182562 28651414 ~ 28651621 (+) True G72422
XM_026936218.2 mRNA upstream 43637 28393936 ~ 28400141 (+) True en2a
XM_034303331.1 mRNA upstream 43637 28393936 ~ 28400141 (+) False en2a
XM_026937188.2 mRNA upstream 60356 28376314 ~ 28383422 (+) True insig1
XM_026937128.2 mRNA upstream 105605 28316404 ~ 28338173 (+) True htr5ab
XM_026936375.2 mRNA upstream 183524 28253028 ~ 28260254 (+) True LOC113540125
XM_026936568.2 mRNA downstream 89426 28558278 ~ 28588619 (+) True rnf32
XM_034303286.1 mRNA downstream 89426 28558278 ~ 28580624 (+) False rnf32
XM_034303288.1 mRNA downstream 134053 28602905 ~ 28611157 (+) False LOC113540233
XM_034303287.1 mRNA downstream 136971 28605823 ~ 28611157 (+) True LOC113540233
XM_026936573.2 mRNA downstream 136971 28605823 ~ 28611157 (+) False LOC113540233
trnat-ugu_8 other upstream 822395 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 823101 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 885876 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 887130 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 954453 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 405504 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1151141 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2277279 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2277279 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2592878 31061730 ~ 31097888 (+) False spsb4a

Expression Profile